View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6875A_low_20 (Length: 426)
Name: NF6875A_low_20
Description: NF6875A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6875A_low_20 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 1 - 426
Target Start/End: Complemental strand, 41962836 - 41962411
Alignment:
| Q |
1 |
ttttaagttactatcattcttttgtttgtctatctctctagtcttcggtgattaaagaagcaaaaagctgggagttagatgctagaattagatgtggacc |
100 |
Q |
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| T |
41962836 |
ttttaagttactatcattcttttgtttgtctatctctctagtcttcggtgattaaagaagcaaaaagctgggagttagatgctagaattagatttggacc |
41962737 |
T |
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| Q |
101 |
atagacatatttttctgtttgtgtaataactaataactaataaaactaaaacgagtttcaatttcctttaaatcttccttattctccacttcactcctta |
200 |
Q |
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| T |
41962736 |
atcgacatatttttctgtttgtgtaataactaataactaataaaactaaaacgagtttcaatttcctttaaatcttccttattctccacttcactcctta |
41962637 |
T |
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| Q |
201 |
ctcacagttcatcctgatttgttggacatacattagttttgtttggtgttgaaattgctttattgaaaaacaagggaaatttactgttttacatccaatg |
300 |
Q |
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| T |
41962636 |
ctcacagttcatcctgatttgttggacatacattagttttgtttggtgttgaaattgctgtattgaaaaacaagggaaatttactgttttacgtccaatg |
41962537 |
T |
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| Q |
301 |
tattttcgttagttattatttcnnnnnnngctaaaataactatttttatacacaggttgcaacatattgatgaagttctgcggtcagctcgtctatctgg |
400 |
Q |
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| T |
41962536 |
tattttcgttaattattatttctttttttgctaaaataactatttttatacacaggttgcaacatattgatgaagttctgcggtcagctcgtctatctgg |
41962437 |
T |
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| Q |
401 |
ctatttaaaccttagaactgtactga |
426 |
Q |
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| T |
41962436 |
ctatttaaacattagaactgtactga |
41962411 |
T |
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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 424
Target Start/End: Original strand, 2185051 - 2185125
Alignment:
| Q |
350 |
acacaggttgcaacatattgatgaagttctgcggtcagctcgtctatctggctatttaaaccttagaactgtact |
424 |
Q |
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| T |
2185051 |
acacaggttggaaaatattgatgaaattttacggtcagctcgtctatccggatatttatacatccgaactgtact |
2185125 |
T |
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