View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6875A_low_201 (Length: 248)
Name: NF6875A_low_201
Description: NF6875A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6875A_low_201 |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 23 - 226
Target Start/End: Complemental strand, 37704657 - 37704454
Alignment:
| Q |
23 |
tttcgtgttaattacgttcaaaaagtctggtcttcgaagatattatttagtttaatgaacaccaaacttttctatgatggttactgaattaatattgttg |
122 |
Q |
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| T |
37704657 |
tttcgtgctaattacgttcaaaaagtctggtcttcgaagatattatttagtttaatgaacaccaaacttttctatgatggttactgaattaatattgttg |
37704558 |
T |
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| Q |
123 |
ccaaatgtcatatcagtatatgtttatgaaaagcacccccaaaacaaaataagggaatacgtagactcaatttgcaaacaatctaataagtcaacctttt |
222 |
Q |
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| T |
37704557 |
ccaaatgtcatatcagtatatgtttatgaaaagcacccccaaaacaaaataagggaatacgtagactcaatttgcaaacaatctaataagtcaacctttt |
37704458 |
T |
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| Q |
223 |
tggt |
226 |
Q |
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|||| |
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| T |
37704457 |
tggt |
37704454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 31 - 225
Target Start/End: Complemental strand, 37699171 - 37698974
Alignment:
| Q |
31 |
taattacgttcaaaaagtct-ggtcttcgaagatattatttagtttaatgaacaccaaacttttctatgatggttactgaattaatattgttgccaaatg |
129 |
Q |
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| T |
37699171 |
taattacgttcgaaaagtcttggttttccaagatgttatttagtttaatgaacaccaaacttttctatgattgttactgaattaatattgttgccaaatg |
37699072 |
T |
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| Q |
130 |
tcatatcagtatatgtttatgaaaagcacccccaaaacaaaataagggaatacgtagactcaa--tttgcaaacaatctaataagtcaacctttttgg |
225 |
Q |
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| T |
37699071 |
tcatatcagtatacggttatgaaaagcacccccaacacaaaataagggaatacctagactcaatgtttgtaaacaatctaataactcaaactttttgg |
37698974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 31 - 226
Target Start/End: Complemental strand, 37437715 - 37437520
Alignment:
| Q |
31 |
taattacgttcaaaaagtct-ggtcttcgaagatattatttagtttaatgaacaccaaacttttctatgatggttactgaattaatattgttgccaaatg |
129 |
Q |
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||||||||||| |||||||| ||||||| || || |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| || |
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| T |
37437715 |
taattacgttcgaaaagtcttggtcttccaatatgttatttagtttaatgaacaccaaacttttctatgattgttattgaattaatattgttgccaattg |
37437616 |
T |
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| Q |
130 |
tcatatcagtatatgtttatgaaaagcacccccaaaacaaaataagggaatacgtagactcaatttgcaaacaatctaataagtcaacctttttggt |
226 |
Q |
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| T |
37437615 |
tcatatcactatacggttatgaaaagca-ccccacattaaaacaagggaatagctagactgaatttgtaaacaatctaataagtcagactttttggt |
37437520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 165 - 226
Target Start/End: Complemental strand, 37698697 - 37698636
Alignment:
| Q |
165 |
aacaaaataagggaatacgtagactcaatttgcaaacaatctaataagtcaacctttttggt |
226 |
Q |
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| T |
37698697 |
aacaaaataagggaatacttagactcaatttgtaaacaatctaataagtcaaactttttggt |
37698636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 30 - 142
Target Start/End: Complemental strand, 37698808 - 37698703
Alignment:
| Q |
30 |
ttaattacgttcaaaaagtct-ggtcttcgaagatattatttagtttaatgaacaccaaacttttctatgatggttactgaattaatattgttgccaaat |
128 |
Q |
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||||||||||| ||||||||| ||||||| ||||| ||||||||||||| ||||||||||||||| |||||| | |||||||||||||||| | |
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| T |
37698808 |
ttaattacgttaaaaaagtcttggtcttccaagatgttatttagtttaacgaacaccaaacttttgtatgattg--------ttaatattgttgccaatt |
37698717 |
T |
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| Q |
129 |
gtcatatcagtata |
142 |
Q |
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||||||||| |||| |
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| T |
37698716 |
gtcatatcactata |
37698703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 31 - 98
Target Start/End: Original strand, 16841041 - 16841109
Alignment:
| Q |
31 |
taattacgttcaaaaagtct-ggtcttcgaagatattatttagtttaatgaacaccaaacttttctatg |
98 |
Q |
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|||||||||||||||||||| ||||||| ||||| |||||||||||| | |||||||||||||| |||| |
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| T |
16841041 |
taattacgttcaaaaagtcttggtcttccaagattttatttagtttattaaacaccaaacttttgtatg |
16841109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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