View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6875A_low_204 (Length: 248)
Name: NF6875A_low_204
Description: NF6875A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6875A_low_204 |
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Alignment Details
Target: chr3 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 3 - 180
Target Start/End: Original strand, 53388248 - 53388425
Alignment:
| Q |
3 |
catcagaaaaagattcatctgaaggtactggtaatggaagtcccaaggaatatttccgtatgaaggatgatgatggtggaagtgaatctcggtcgcatgt |
102 |
Q |
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| T |
53388248 |
catcagaaaaagattcatctgaaggtattagtgagggaagtcccaaggaacaattatgtatgaaggatgatgacggtggaagtgaatctcggtcgcatgt |
53388347 |
T |
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| Q |
103 |
tgattctgcatcaagtgagagagcaaagactacaatgctaccaaatggattaatcaacgaagattatagtcctgtaat |
180 |
Q |
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| T |
53388348 |
tgattctacgtcaagtgagagaacaaagcctacaatgctaccagatggattaatcaatgaggattgtagtcctgtaat |
53388425 |
T |
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Target: chr8 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 3 - 130
Target Start/End: Original strand, 10597537 - 10597664
Alignment:
| Q |
3 |
catcagaaaaagattcatctgaaggtactggtaatggaagtcccaaggaatatttccgtatgaaggatgatgatggtggaagtgaatctcggtcgcatgt |
102 |
Q |
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| T |
10597537 |
catcagaaaaagattcatctgaaggtactagtgatggaagtcccaaggaacagttctgtatgaaggatgatgatggtagaagtgaatctcggtcgcatgt |
10597636 |
T |
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| Q |
103 |
tgattctgcatcaagtgagagagcaaag |
130 |
Q |
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| T |
10597637 |
tgattctgcatcaagtgagagaacaaag |
10597664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 96 - 246
Target Start/End: Original strand, 10597666 - 10597816
Alignment:
| Q |
96 |
cgcatgttgattctgcatcaagtgagagagcaaagactacaatgctaccaaatggattaatcaacgaagattatagtcctgtaattgctgctgatgcatt |
195 |
Q |
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| T |
10597666 |
cgcatgttgattctgcattaagtgagagaacaaagaccacaatgctaccaaatggattaatcaatgaggatagcagtcctgtaatggctgctgatgcatc |
10597765 |
T |
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| Q |
196 |
ggattccacaagtaatttttctgacaaaacggattcagaatgcaaatcaaa |
246 |
Q |
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| T |
10597766 |
ggattccacaagtgatcttgttgacaaaacggatttggaatgcaaatcaaa |
10597816 |
T |
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