View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6875A_low_205 (Length: 247)
Name: NF6875A_low_205
Description: NF6875A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6875A_low_205 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 15 - 247
Target Start/End: Complemental strand, 38125202 - 38124970
Alignment:
| Q |
15 |
agaaagtaagctggataaaacaatctgagtgctgggtagtatttgtctatctaatctaagaataaaatattctcaaaagatcaggaaactcacctaatcc |
114 |
Q |
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| T |
38125202 |
agaaagtaagctggataaaacaatctgagtgctgggtagtatttgtctatctaatctaagaataaaatattctcaaaagatcaggaaactcacctaatcc |
38125103 |
T |
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| Q |
115 |
acgtgcggttcatatacgtatacgtattcgatcaattttgtcttcatcgacttcgattgcccgaataaagaccaacaaatttaatatcatacagaagagt |
214 |
Q |
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| T |
38125102 |
acgtgcggttcatatacgtatacgtattcgatcaattttgtcttcattgacttcgattgcccgaataaagaccaacaaatttaatatcatacagaagagt |
38125003 |
T |
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| Q |
215 |
tgcattacccggtatattgcagtcacctattga |
247 |
Q |
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| T |
38125002 |
tgcattacccggtatattgcagtcacctattga |
38124970 |
T |
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