View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6875A_low_21 (Length: 424)
Name: NF6875A_low_21
Description: NF6875A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6875A_low_21 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 6 - 424
Target Start/End: Complemental strand, 44826938 - 44826521
Alignment:
| Q |
6 |
gacaatgagatggacatcaaagtcaaggtcgatgtcaagaaagagcaaatctaagaagttcaaatattcttcaaaatcttgtggacttccatccaaatgg |
105 |
Q |
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| T |
44826938 |
gacaatgagatgc-catcaaagtcaaggtcgatgtcaagaaagagcaaatctaagaagttcaaatattcttcaaaatcttgtggacttccatccaaatgg |
44826840 |
T |
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| Q |
106 |
aaaagaagaagaaataccgatgagaaaaacaaactggaaaagcactatacaccttgtgaatgtgagggggcgtgtggaaagcaatgtacatgtcgtctta |
205 |
Q |
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| T |
44826839 |
aaaagaagaagaaataccgatgagaaaaacaaactggaaaagcactatacaccttgtgaatgtgagggggcgtgtggaaagcaatgtccatgtcgtctta |
44826740 |
T |
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| Q |
206 |
atggttattgctgtgaaaaatattgtgggtatgtcaattttcatttaattatgttacttttcgatggaaaacaactatgttttcaatgtgatcagttata |
305 |
Q |
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| T |
44826739 |
atggtttttgctgtgaaaaatattgtgggtatgtcaattttcatttaattatgttacttttcgatggaaaacaactatgttttcaatgtgatcagttata |
44826640 |
T |
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| Q |
306 |
ttttctaccttcaggtgttcaaagctctgtaaaaatctatttggaggatgtcagtgtactaagagtcagtgtagaagtcgacactgtccatgttttgcag |
405 |
Q |
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|||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44826639 |
ttttttaccttcaggtgttcaaagctctgtaaaaatcgatttggaggatgtcagtgtactaagagtcagtgtagaagtcgacactgtccatgttttgcag |
44826540 |
T |
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| Q |
406 |
cttcaagagattgtgaccc |
424 |
Q |
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| T |
44826539 |
cttcaagagattgtgaccc |
44826521 |
T |
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