View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6875A_low_219 (Length: 243)
Name: NF6875A_low_219
Description: NF6875A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6875A_low_219 |
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Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 38125317 - 38125539
Alignment:
| Q |
1 |
gaaccgtcatgagaaaacacagtatgcaacattaaaattagctgacacacatgatcatggttaaagcatatgctaatgctacttaaaattttgacacagg |
100 |
Q |
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| T |
38125317 |
gaaccttcatgagaaaacacagtatgcaacattaaaattagctgtcacacatgatcatggttaaagcatatgc------tacttaaaattttgacacagg |
38125410 |
T |
|
| Q |
101 |
gtcctttgtgaccatttttcttgtgcaatatacaaaatgatgtttgaactcagatgcaaactagttaaattcatcattattaaccttatcccagtggctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38125411 |
gtcctttgtgaccatttttcttgtgcaatatacaaaatgatgtttgaactcagatgcaaactagttaaattcatcattattaaccttatcccagtggctt |
38125510 |
T |
|
| Q |
201 |
gactaattcatcaaatttacaacactata |
229 |
Q |
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|||| |||||||||||||||||||||||| |
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| T |
38125511 |
gacttattcatcaaatttacaacactata |
38125539 |
T |
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