View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6875A_low_221 (Length: 243)
Name: NF6875A_low_221
Description: NF6875A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6875A_low_221 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 9 - 225
Target Start/End: Original strand, 19506312 - 19506528
Alignment:
| Q |
9 |
gaaaaatataacataactaaatgtataattaggcctagacaaaattgatttatacttatgcttgtgttaatttgaagcagatccctgctgatatggtggt |
108 |
Q |
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| T |
19506312 |
gaaaaaaataacataactaaatgtataattaggcctagacaaaattgatttatacttatgcttgtgttaatttgaagcagatccctgctgatatggtggt |
19506411 |
T |
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| Q |
109 |
gaatgcaatgctagtggccatggtaagtcatgcaaatcaaccttgtgatgatagcatatatcatgtgggttcatctgttgggaatccagtgagatatgag |
208 |
Q |
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| T |
19506412 |
gaatgcaatgctagtggccatggtaagtcatgcaaatcaaccttgtgatgatagcatatatcacgtaggttcatctgttgggaatccagtgagatatgag |
19506511 |
T |
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| Q |
209 |
agtctcagagactactg |
225 |
Q |
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| T |
19506512 |
agtctcagagactactg |
19506528 |
T |
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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 204
Target Start/End: Complemental strand, 36194326 - 36194208
Alignment:
| Q |
83 |
aagcagatccctgctgatatggtggtgaatgcaatgctagtggccatggtaagtcatgcaaatcaaccttgtgatgatagcatatatcatgtgggttcat |
182 |
Q |
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|||||||| || ||||| |||||||| ||||||||| ||||||| ||||| |||||||||||||||| | |||| | |||||||||||||||| | |
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| T |
36194326 |
aagcagataccagctgacatggtggtcaatgcaatgttagtggctatggtggctcatgcaaatcaacctagagatg---gggtatatcatgtgggttcct |
36194230 |
T |
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| Q |
183 |
ctgttgggaatccagtgagata |
204 |
Q |
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| T |
36194229 |
ctgttagaaacccattgagata |
36194208 |
T |
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