View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6875A_low_229 (Length: 240)

Name: NF6875A_low_229
Description: NF6875A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6875A_low_229
NF6875A_low_229
[»] chr2 (10 HSPs)
chr2 (22-223)||(809751-809946)
chr2 (22-192)||(39155720-39155884)
chr2 (24-189)||(15001780-15001940)
chr2 (114-202)||(10414812-10414900)
chr2 (114-213)||(4404998-4405100)
chr2 (114-202)||(2587162-2587250)
chr2 (187-223)||(27561100-27561136)
chr2 (187-223)||(37457541-37457577)
chr2 (114-151)||(20024531-20024568)
chr2 (116-192)||(31713225-31713300)
[»] chr8 (4 HSPs)
chr8 (22-223)||(4707560-4707753)
chr8 (114-202)||(15998612-15998700)
chr8 (22-92)||(26341505-26341575)
chr8 (114-149)||(15256673-15256708)
[»] chr4 (6 HSPs)
chr4 (22-202)||(18695238-18695414)
chr4 (22-218)||(27562219-27562409)
chr4 (22-94)||(4764562-4764634)
chr4 (149-213)||(4764663-4764727)
chr4 (22-192)||(54352887-54353048)
chr4 (187-223)||(5742764-5742800)
[»] chr3 (2 HSPs)
chr3 (22-213)||(6912405-6912592)
chr3 (22-197)||(19433938-19434106)
[»] chr1 (6 HSPs)
chr1 (22-202)||(17654444-17654616)
chr1 (22-223)||(47051606-47051800)
chr1 (22-147)||(16099746-16099866)
chr1 (114-202)||(29290178-29290266)
chr1 (114-202)||(14649216-14649304)
chr1 (114-202)||(14659006-14659094)
[»] scaffold0406 (1 HSPs)
scaffold0406 (26-202)||(2594-2765)
[»] scaffold0713 (2 HSPs)
scaffold0713 (22-202)||(4047-4219)
scaffold0713 (22-94)||(11-83)
[»] chr6 (10 HSPs)
chr6 (22-202)||(9821602-9821774)
chr6 (22-94)||(33062072-33062144)
chr6 (24-94)||(25479338-25479408)
chr6 (114-190)||(28039675-28039748)
chr6 (114-190)||(13142982-13143058)
chr6 (116-192)||(17354761-17354837)
chr6 (114-192)||(27526188-27526266)
chr6 (116-190)||(27683377-27683451)
chr6 (116-190)||(27690698-27690772)
chr6 (116-144)||(25479422-25479450)
[»] chr5 (4 HSPs)
chr5 (114-223)||(42784416-42784525)
chr5 (22-198)||(5520502-5520669)
chr5 (22-94)||(15597679-15597752)
chr5 (114-190)||(15597591-15597667)
[»] chr7 (2 HSPs)
chr7 (114-202)||(28802522-28802610)
chr7 (114-218)||(36265553-36265657)
[»] scaffold0438 (2 HSPs)
scaffold0438 (22-91)||(8684-8753)
scaffold0438 (22-92)||(11666-11736)


Alignment Details
Target: chr2 (Bit Score: 154; Significance: 8e-82; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 22 - 223
Target Start/End: Original strand, 809751 - 809946
Alignment:
Q  22 agaccataataatatcgatgactttaaacatgagcatcattgataagaaaaagttcaaagggtgtgttccccannnnnnnataaacactttaactttaac 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||      ||||    
T  809751 agaccataataatatcgatgactttaaacatgagcatcattgataagaaaaagttcaaagggtgtgttccccatttttttataaacactt------taac 809844  T
Q  122 atagaaaattatcaaaatatcaataatattaatagggaaaatatgcgataatgatcgttatcaactcacagatatgacgaaagaactcaattcctagtga 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  809845 atagaaaattatcaaaatatcaataatattaatagggaaaatatgcgataatgatcgttatcaactcacagatatgacgaaagaactcaattcctaggga 809944  T

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Target: chr2; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 22 - 192
Target Start/End: Original strand, 39155720 - 39155884
Alignment:
Q  22 agaccataataatatcgatgactttaaacatgagcatcattgataagaaaaa-gttcaaagggtgtgttccccannnnnnnataaacactttaactttaa 120  Q
    ||||||||||||||||||||||||||||||| || |||| ||| |||||||| |||||||||| ||||||||||       ||||||||||      |||    
T  39155720 agaccataataatatcgatgactttaaacataagtatcaatgagaagaaaaatgttcaaagggcgtgttccccatttttt-ataaacactt------taa 39155812  T
Q  121 catagaaaattatcaaaatatcaataatattaatagggaaaatatgcgataatgatcgttatcaactcacag 192  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||    
T  39155813 catagaaaattatcaaaatatcaataatattaatagtgaaaatatgtgataatgatcgttatcaactcacag 39155884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 24 - 189
Target Start/End: Original strand, 15001780 - 15001940
Alignment:
Q  24 accataataatatcgatgactttaaa--catgagcatcattgataagaaaaa-gttcaaagggtgtgttccccannnnnnnataaacactttaactttaa 120  Q
    ||||||||||||||||||||||||||  ||||||||||||||| |||||||| | |||||||||||||||||||       ||||||||||      |||    
T  15001780 accataataatatcgatgactttaaaaacatgagcatcattgagaagaaaaaagctcaaagggtgtgttccccattttt--ataaacactt------taa 15001871  T
Q  121 catagaaaattatcaaaatatcaataatattaatagggaaaatatgcgataatgatcgttatcaactca 189  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  15001872 catagaaaattatcaaaatatcaataatattaatagtgaaaatatgtgataatgatcgttatcaactca 15001940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 114 - 202
Target Start/End: Complemental strand, 10414900 - 10414812
Alignment:
Q  114 actttaacatagaaaattatcaaaatatcaataatattaatagggaaaatatgcgataatgatcgttatcaactcacagatatgacgaa 202  Q
    ||||||||||| ||||| || |||||| ||||||||   |||  ||||||| |||||||||||||| |||||||||||| |||||||||    
T  10414900 actttaacatataaaatcataaaaatagcaataataacgatattgaaaataagcgataatgatcgtcatcaactcacagttatgacgaa 10414812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 114 - 213
Target Start/End: Complemental strand, 4405100 - 4404998
Alignment:
Q  114 actttaacatagaaaattatcaaaatatcaataatattaataggga---aaatatgcgataatgatcgttatcaactcacagatatgacgaaagaactca 210  Q
    ||||| ||||||||| | ||||||||| |||||||| |||| |  |   ||||| ||||||||||||||||||||||||||| ||||| |||  ||||||    
T  4405100 actttgacatagaaattaatcaaaataccaataataataattgtaattaaaataagcgataatgatcgttatcaactcacagttatgatgaatcaactca 4405001  T
Q  211 att 213  Q
    |||    
T  4405000 att 4404998  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 202
Target Start/End: Complemental strand, 2587250 - 2587162
Alignment:
Q  114 actttaacatagaaaattatcaaaatatcaataatattaatagggaaaatatgcgataatgatcgttatcaactcacagatatgacgaa 202  Q
    |||||||| || ||||| | ||||||||||||||||   |||   |||||| | |||||||||||| |||||||||||| |||||||||    
T  2587250 actttaacttataaaatcaccaaaatatcaataatagagataattaaaataagtgataatgatcgtcatcaactcacagttatgacgaa 2587162  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 223
Target Start/End: Complemental strand, 27561136 - 27561100
Alignment:
Q  187 tcacagatatgacgaaagaactcaattcctagtgatg 223  Q
    ||||| |||||||||||||||||||||||||||||||    
T  27561136 tcacatatatgacgaaagaactcaattcctagtgatg 27561100  T

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Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 223
Target Start/End: Complemental strand, 37457577 - 37457541
Alignment:
Q  187 tcacagatatgacgaaagaactcaattcctagtgatg 223  Q
    ||||| |||||||||||||||||||||||||||||||    
T  37457577 tcacatatatgacgaaagaactcaattcctagtgatg 37457541  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 151
Target Start/End: Original strand, 20024531 - 20024568
Alignment:
Q  114 actttaacatagaaaattatcaaaatatcaataatatt 151  Q
    ||||||||| ||||||| ||||||||||||||||||||    
T  20024531 actttaacaaagaaaataatcaaaatatcaataatatt 20024568  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 192
Target Start/End: Complemental strand, 31713300 - 31713225
Alignment:
Q  116 tttaacatagaaaattatcaaaatatcaataatattaatagggaaaatatgcgataatgatcgttatcaactcacag 192  Q
    ||||||||| ||||| || |||||||||||||||   |||  ||||||| |||||||||||||| | ||||||||||    
T  31713300 tttaacatataaaatcat-aaaatatcaataataacgatattgaaaataagcgataatgatcgtcaccaactcacag 31713225  T

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Target: chr8 (Bit Score: 141; Significance: 5e-74; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 22 - 223
Target Start/End: Original strand, 4707560 - 4707753
Alignment:
Q  22 agaccataataatatcgatgactttaaacatgagcatcattgataagaaaaagttcaaagggtgtgttccccannnnnnnataaacactttaactttaac 121  Q
    |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||       ||||||||||      ||||    
T  4707560 agaccataataacatcgatgactttaaacatgagcatcattgagaagaaaaagttcaaagggtgtgttccccattttt--ataaacactt------taac 4707651  T
Q  122 atagaaaattatcaaaatatcaataatattaatagggaaaatatgcgataatgatcgttatcaactcacagatatgacgaaagaactcaattcctagtga 221  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4707652 atagaaaattatcaaagtatcaataatattaatagggaaaatatgcgataatgatcgttatcaactcacagatatgacgaaagaactcaattcctagtga 4707751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 114 - 202
Target Start/End: Complemental strand, 15998700 - 15998612
Alignment:
Q  114 actttaacatagaaaattatcaaaatatcaataatattaatagggaaaatatgcgataatgatcgttatcaactcacagatatgacgaa 202  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | |||||||||    
T  15998700 acttttacatagaaaattatcaaaatatcaataatattaatagggaaaatatgcgataatgatcgttatcaactcagtgttatgacgaa 15998612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 22 - 92
Target Start/End: Original strand, 26341505 - 26341575
Alignment:
Q  22 agaccataataatatcgatgactttaaacatgagcatcattgataagaaaaagttcaaagggtgtgttccc 92  Q
    ||||| ||||| ||| ||||||||||||||| |  |||| ||| ||||||| |||||||||||||||||||    
T  26341505 agaccgtaatagtattgatgactttaaacataaatatcaatgacaagaaaatgttcaaagggtgtgttccc 26341575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 149
Target Start/End: Complemental strand, 15256708 - 15256673
Alignment:
Q  114 actttaacatagaaaattatcaaaatatcaataata 149  Q
    ||||||||||| ||||||||||||||||||||||||    
T  15256708 actttaacatataaaattatcaaaatatcaataata 15256673  T

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Target: chr4 (Bit Score: 123; Significance: 3e-63; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 22 - 202
Target Start/End: Original strand, 18695238 - 18695414
Alignment:
Q  22 agaccataataatatcgatgactttaaacatgagcatcattgataagaaaaagttcaaagggtgtgttccccannnnnnnataaacactttaactttaac 121  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||        || | ||    ||||||||    
T  18695238 agaccataataatatcgatgactttaaacacgagcatcattgataagaaaaagttcaaagggtgtgttccccatttttttttataaac----actttaac 18695333  T
Q  122 atagaaaattatcaaaatatcaataatattaatagggaaaatatgcgataatgatcgttatcaactcacagatatgacgaa 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  18695334 atagaaaattatcaaaatatcaataatattaatagggaaaatatgcgataatgatcgttatcaactcaccgatatgacgaa 18695414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 22 - 218
Target Start/End: Original strand, 27562219 - 27562409
Alignment:
Q  22 agaccataataatatcgatgactttaaacatgagcatcattgataagaaaaa-gttcaaagggtgtgttccccannnnnnnataaacactttaactttaa 120  Q
    ||||||||||||||||||||||||||||||| || |||| ||| |||||||| |||||||||| ||||||||||       ||||||||||      |||    
T  27562219 agaccataataatatcgatgactttaaacataagtatcaatgagaagaaaaatgttcaaagggcgtgttccccatttttt-ataaacactt------taa 27562311  T
Q  121 catagaaaattatcaaaatatcaataatattaatagggaaaatatgcgataatgatcgttatcaactcacagatatgacgaaagaactcaattcctag 218  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||  ||||| |||| || || ||||||||    
T  27562312 catagaaaattatcaaaatatcaataatattaatagtgaaaatatgtgataatgatcgttatcaactcacaactatgaagaaacaaatccattcctag 27562409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 22 - 94
Target Start/End: Original strand, 4764562 - 4764634
Alignment:
Q  22 agaccataataatatcgatgactttaaacatgagcatcattgataagaaaaagttcaaagggtgtgttcccca 94  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  4764562 agaccataataatatcgatgactttaaacatgagcatcattgagaagaaaaagttcaaagggtgtgttcccca 4764634  T

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Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 149 - 213
Target Start/End: Original strand, 4764663 - 4764727
Alignment:
Q  149 attaatagggaaaatatgcgataatgatcgttatcaactcacagatatgacgaaagaactcaatt 213  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| |||  |||||||||    
T  4764663 attaatagggaaaatatgcgataatgatcgttatcaactcacagttatgatgaatcaactcaatt 4764727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 22 - 192
Target Start/End: Original strand, 54352887 - 54353048
Alignment:
Q  22 agaccataataatatcgatgactttaaacatgagcatcattgataagaaaaa-gttcaaagggtgtgttccccannnnnnnataaacactttaactttaa 120  Q
    ||||||||||||||||||||||||||||||| || |||| ||| |||||||| |||||||||  ||||||||||       ||||||      |||||||    
T  54352887 agaccataataatatcgatgactttaaacataagtatcaatgagaagaaaaatgttcaaagg--gtgttcccca--tttttataaac------actttaa 54352976  T
Q  121 catagaaaattatcaaaatatcaataatattaatagggaaaatatgcgataatgatcgttatcaactcacag 192  Q
    |||||||||| | ||||||||||||||||   |||   |||||| | |||||||||||| ||||||||||||    
T  54352977 catagaaaatcaccaaaatatcaataatagctataattaaaataagtgataatgatcgtcatcaactcacag 54353048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 223
Target Start/End: Original strand, 5742764 - 5742800
Alignment:
Q  187 tcacagatatgacgaaagaactcaattcctagtgatg 223  Q
    ||||| |||||||||||||||||||||||||||||||    
T  5742764 tcacatatatgacgaaagaactcaattcctagtgatg 5742800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 22 - 213
Target Start/End: Original strand, 6912405 - 6912592
Alignment:
Q  22 agaccataataatatcgatgactttaaacatgagcatcattgataagaaaaagttcaaagggtgtgttccccannnnnnnataaacactttaactttaac 121  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||        || | ||    ||||||||    
T  6912405 agaccataataatatcgatgactttaaacatgagcatcattgagaagaaaaagttcaaagggtgtgttccccatttttttttataaac----actttaac 6912500  T
Q  122 atagaaaattatcaaaatatcaataatattaatagggaaaatatgcgataatgatcgttatcaactcacagatatgacgaaagaactcaatt 213  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||  |||||||||    
T  6912501 atagaaaattataaaaatatcaataatattaatagggaaaatatgcgataatgatcgttatcaactcacagttatgacgaatcaactcaatt 6912592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 22 - 197
Target Start/End: Complemental strand, 19434106 - 19433938
Alignment:
Q  22 agaccataataatatcgatgactttaaacatgagcatcattgataagaaaaa-gttcaaagggtgtgttccccannnnnnnataaacactttaactttaa 120  Q
    ||||||||||||||||||||||||||||||| || |||| ||| |||||||| ||||||||||  |||||||||       |||||||||||||          
T  19434106 agaccataataatatcgatgactttaaacataagtatcaatgagaagaaaaatgttcaaagggcatgttccccattttt--ataaacactttaag----- 19434014  T
Q  121 catagaaaattatcaaaatatcaataatattaatagggaaaatatgcgataatgatcgttatcaactcacagatatg 197  Q
     |||||||||||||||||||||||||||||||||||  |||||||| ||||||||||||||||||||||||| ||||    
T  19434013 -atagaaaattatcaaaatatcaataatattaatagtaaaaatatgtgataatgatcgttatcaactcacagttatg 19433938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 120; Significance: 2e-61; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 22 - 202
Target Start/End: Original strand, 17654444 - 17654616
Alignment:
Q  22 agaccataataatatcgatgactttaaacatgagcatcattgataagaaaaagttcaaagggtgtgttccccannnnnnnataaacactttaactttaac 121  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||       |||||      |||||||||    
T  17654444 agaccataataatatcgatgactttaaacatgagcatcattgagaagaaaaagttcaaagggtgtgttccccattttt--ataaa------aactttaac 17654535  T
Q  122 atagaaaattatcaaaatatcaataatattaatagggaaaatatgcgataatgatcgttatcaactcacagatatgacgaa 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  17654536 atagaaaattatcaaaatatcaataatattaatagggaaaatatgcgataatgatcgttatcaactcacagttacgacgaa 17654616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 22 - 223
Target Start/End: Original strand, 47051606 - 47051800
Alignment:
Q  22 agaccataataatatcgatgactttaaacatgagcatcattgataagaaaaa-gttcaaagggtgtgttccccannnnnnnataaacactttaactttaa 120  Q
    ||||||||||||||||||||||||||||||| || |||| ||| |||||||| |||||||||||||||||||||       ||||| ||    |||||||    
T  47051606 agaccataataatatcgatgactttaaacataagtatcaatgagaagaaaaatgttcaaagggtgtgttccccatttt---ataaa-ac----actttaa 47051697  T
Q  121 catagaaaattatcaaaatatcaataatattaatagggaaaatatgcgataatgatcgttatcaactcacagatatgacgaaagaactcaattcctagtg 220  Q
    |||||||||||||||||||||||||||||||||||| ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47051698 catagaaaattatcaaaatatcaataatattaatagtgaaaatatatgataatgatcgttatcaactcacagatatgacgaaagaactcaattcctagtg 47051797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 22 - 147
Target Start/End: Complemental strand, 16099866 - 16099746
Alignment:
Q  22 agaccataataatatcgatgactttaaacatgagcatcattgataagaaaaa---gttcaaagggtgtgttccccannnnnnnataaacactttaacttt 118  Q
    ||||||||||||||||||||||||||||||| || |||| ||| ||||||||   |||||||||||||||||||||       ||||||      |||||    
T  16099866 agaccataataatatcgatgactttaaacataagtatcaatgagaagaaaaaaatgttcaaagggtgtgttcccca--tttttataaac------acttt 16099775  T
Q  119 aacatagaaaattatcaaaatatcaataa 147  Q
    |||||||||||||||||||||||||||||    
T  16099774 aacatagaaaattatcaaaatatcaataa 16099746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 114 - 202
Target Start/End: Original strand, 29290178 - 29290266
Alignment:
Q  114 actttaacatagaaaattatcaaaatatcaataatattaatagggaaaatatgcgataatgatcgttatcaactcacagatatgacgaa 202  Q
    ||||||| ||| ||||| || |||||| ||||||||   |||  ||||||| |||||||||||||| |||||||||||| |||||||||    
T  29290178 actttaaaatataaaatcataaaaatagcaataataacgatattgaaaataagcgataatgatcgtcatcaactcacagttatgacgaa 29290266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 202
Target Start/End: Complemental strand, 14649304 - 14649216
Alignment:
Q  114 actttaacatagaaaattatcaaaatatcaataatattaatagggaaaatatgcgataatgatcgttatcaactcacagatatgacgaa 202  Q
    |||||||| || ||||| | ||||||||||||||||   |||   |||||| | |||||||||||| |||||||||||| || ||||||    
T  14649304 actttaacttataaaatcaccaaaatatcaataatagcgataattaaaataagtgataatgatcgtcatcaactcacagttacgacgaa 14649216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 202
Target Start/End: Complemental strand, 14659094 - 14659006
Alignment:
Q  114 actttaacatagaaaattatcaaaatatcaataatattaatagggaaaatatgcgataatgatcgttatcaactcacagatatgacgaa 202  Q
    |||||||| || ||||| | ||||||||||||||||   |||   |||||| | |||||||||||| |||||||||||| || ||||||    
T  14659094 actttaacttataaaatcaccaaaatatcaataatagcgataattaaaataagtgataatgatcgtcatcaactcacagttacgacgaa 14659006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 26 - 202
Target Start/End: Complemental strand, 2765 - 2594
Alignment:
Q  26 cataataatatcgatgactttaaacatgagcatcattgataagaaaaagttcaaagggtgtgttccccannnnnnn-ataaacactttaactttaacata 124  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||        ||||||||||||||      |||    
T  2765 cataataatatcgatgactttaaacatgagcatcattgagaagaaaaagttcaaagggtgtgttccccattttttttataaacactttaac------ata 2672  T
Q  125 gaaaattatcaaaatatcaataatattaatagggaaaatatgcgataatgatcgttatcaactcacagatatgacgaa 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  2671 gaaaattatcaaaatatcaataatattaatagggaaaatatgcgataatgatcgttatcaactcacagttatgacgaa 2594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0713 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: scaffold0713
Description:

Target: scaffold0713; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 22 - 202
Target Start/End: Complemental strand, 4219 - 4047
Alignment:
Q  22 agaccataataatatcgatgactttaaacatgagcatcattgataagaaaaagttcaaagggtgtgttccccannnnnnnataaacactttaactttaac 121  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||       |||||      |||||||||    
T  4219 agaccataataatatcgatgactttaaacatgagcatcattgagaagaaaaagttcaaagggtgtgttccccattttt--ataaa------aactttaac 4128  T
Q  122 atagaaaattatcaaaatatcaataatattaatagggaaaatatgcgataatgatcgttatcaactcacagatatgacgaa 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||    
T  4127 atagaaaattatcaaaatatcaataatattaatagggaaaatatgcgataatgatcgttatcaactcatagttacgacgaa 4047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0713; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 22 - 94
Target Start/End: Complemental strand, 83 - 11
Alignment:
Q  22 agaccataataatatcgatgactttaaacatgagcatcattgataagaaaaagttcaaagggtgtgttcccca 94  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  83 agaccataataatatcgatgactttaaacatgagcatcattgagaagaaaaagttcaaagggtgtgttcccca 11  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 112; Significance: 9e-57; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 22 - 202
Target Start/End: Complemental strand, 9821774 - 9821602
Alignment:
Q  22 agaccataataatatcgatgactttaaacatgagcatcattgataagaaaaagttcaaagggtgtgttccccannnnnnnataaacactttaactttaac 121  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||       ||||||||||||||          
T  9821774 agaccataataatatcgatgactttaaacatgagcatcattgaggagaaaaagttcaaagggtgtgttccccattttt--ataaacactttaac------ 9821683  T
Q  122 atagaaaattatcaaaatatcaataatattaatagggaaaatatgcgataatgatcgttatcaactcacagatatgacgaa 202  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  9821682 atataaaattatcaaaatatcaataatattaatagggaaaatatgcgataatgatcgttatcaactcacagttatggcgaa 9821602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 22 - 94
Target Start/End: Complemental strand, 33062144 - 33062072
Alignment:
Q  22 agaccataataatatcgatgactttaaacatgagcatcattgataagaaaaagttcaaagggtgtgttcccca 94  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  33062144 agaccataataatatcgatgactttaaacatgagcatcattgagaagaaaaagttcaaagggtgtgttcccca 33062072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 24 - 94
Target Start/End: Original strand, 25479338 - 25479408
Alignment:
Q  24 accataataatatcgatgactttaaacatgagcatcattgataagaaaaagttcaaagggtgtgttcccca 94  Q
    |||||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||||    
T  25479338 accataataatatcgatgactttaaacatgagcaacattgagaagaaaaagttcaatgggtgtgttcccca 25479408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 114 - 190
Target Start/End: Complemental strand, 28039748 - 28039675
Alignment:
Q  114 actttaacatagaaaattatcaaaatatcaataatattaatagggaaaatatgcgataatgatcgttatcaactcac 190  Q
    |||||||||||||||||   |||||||||||||||||||||||  |||||||| |||||||||||||||||||||||    
T  28039748 actttaacatagaaaat---caaaatatcaataatattaatagtaaaaatatgtgataatgatcgttatcaactcac 28039675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 114 - 190
Target Start/End: Original strand, 13142982 - 13143058
Alignment:
Q  114 actttaacatagaaaattatcaaaatatcaataatattaatagggaaaatatgcgataatgatcgttatcaactcac 190  Q
    ||||||||||| ||||| || |||||||||||||||   |||  ||||||| |||||||||||||| ||||||||||    
T  13142982 actttaacatataaaatcataaaaatatcaataataacgatattgaaaataagcgataatgatcgtcatcaactcac 13143058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 192
Target Start/End: Complemental strand, 17354837 - 17354761
Alignment:
Q  116 tttaacatagaaaattatcaaaatatcaataatattaatagggaaaatatgcgataatgatcgttatcaactcacag 192  Q
    ||||||||| ||||| || |||||||||||||||   |||  ||||||| || ||||||||||| ||||||||||||    
T  17354837 tttaacatataaaatcataaaaatatcaataataacgatattgaaaataagcaataatgatcgtaatcaactcacag 17354761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 192
Target Start/End: Complemental strand, 27526266 - 27526188
Alignment:
Q  114 actttaacatagaaaattatcaaaatatcaataatattaatagggaaaatatgcgataatgatcgttatcaactcacag 192  Q
    |||||||| || ||||||| ||||||||||||||||   |||   |||||| | |||||||||||| ||||||||||||    
T  27526266 actttaacttataaaattaccaaaatatcaataatagcgataattaaaataagtgataatgatcgtcatcaactcacag 27526188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 190
Target Start/End: Complemental strand, 27683451 - 27683377
Alignment:
Q  116 tttaacatagaaaattatcaaaatatcaataatattaatagggaaaatatgcgataatgatcgttatcaactcac 190  Q
    ||||||||| ||||| || |||||||||||||||   |||  ||||||| || ||||||||||| ||||||||||    
T  27683451 tttaacatataaaatcataaaaatatcaataataacgatattgaaaataagcaataatgatcgtcatcaactcac 27683377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 190
Target Start/End: Complemental strand, 27690772 - 27690698
Alignment:
Q  116 tttaacatagaaaattatcaaaatatcaataatattaatagggaaaatatgcgataatgatcgttatcaactcac 190  Q
    ||||||||| ||||| || |||||||||||||||   |||  ||||||| || ||||||||||| ||||||||||    
T  27690772 tttaacatataaaatcataaaaatatcaataataacgatattgaaaataagcaataatgatcgtcatcaactcac 27690698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 144
Target Start/End: Original strand, 25479422 - 25479450
Alignment:
Q  116 tttaacatagaaaattatcaaaatatcaa 144  Q
    |||||||||||||||||||||||||||||    
T  25479422 tttaacatagaaaattatcaaaatatcaa 25479450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 114 - 223
Target Start/End: Complemental strand, 42784525 - 42784416
Alignment:
Q  114 actttaacatagaaaattatcaaaatatcaataatattaatagggaaaatatgcgataatgatcgttatcaactcacagatatgacgaaagaactcaatt 213  Q
    |||||||| || ||||| | ||||||||||||||||   |||   |||||| | |||||||||||| |||||||||||||||||||||||||||||||||    
T  42784525 actttaacttataaaatcaccaaaatatcaataatagcgataattaaaataagtgataatgatcgtcatcaactcacagatatgacgaaagaactcaatt 42784426  T
Q  214 cctagtgatg 223  Q
    ||||||||||    
T  42784425 cctagtgatg 42784416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 198
Target Start/End: Original strand, 5520502 - 5520669
Alignment:
Q  22 agaccataataatatcgatgactttaaacatgagcatcattgataagaaaaa-gttcaaagggtgtgttccccannnnnnnataaacactttaactttaa 120  Q
    ||||||||||||||||||||||||||||||| || |||| ||| | |||||| |||||||||||||  ||||||       ||||||||||      |||    
T  5520502 agaccataataatatcgatgactttaaacataagtatcaatgagaggaaaaatgttcaaagggtgt--tccccattttt--ataaacactt------taa 5520591  T
Q  121 catagaaaattatcaaaatatcaataatattaatagggaaaatatgcgataatgatcgttatcaactcacagatatga 198  Q
    |||| ||||| | ||||||||||||||||   |||   |||||| | |||||||||||| |||||||||||| |||||    
T  5520592 catacaaaatcaccaaaatatcaataatagctataattaaaataagtgataatgatcgtcatcaactcacagttatga 5520669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 94
Target Start/End: Complemental strand, 15597752 - 15597679
Alignment:
Q  22 agaccataataatatcgatgactttaaacatgagcatcattgataagaaaaag-ttcaaagggtgtgttcccca 94  Q
    |||||||||||||||| |||||| | ||||| || |||| ||| | ||||||  ||||||||||||||||||||    
T  15597752 agaccataataatatcaatgactgttaacataagtatcaatgagaggaaaaatcttcaaagggtgtgttcccca 15597679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 190
Target Start/End: Complemental strand, 15597667 - 15597591
Alignment:
Q  114 actttaacatagaaaattatcaaaatatcaataatattaatagggaaaatatgcgataatgatcgttatcaactcac 190  Q
    ||||||||||| ||||| || ||||||| |||||||   |||  ||||||| | |||||||||||| ||||||||||    
T  15597667 actttaacatataaaatcataaaaatattaataataaagataatgaaaataagtgataatgatcgtcatcaactcac 15597591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 114 - 202
Target Start/End: Complemental strand, 28802610 - 28802522
Alignment:
Q  114 actttaacatagaaaattatcaaaatatcaataatattaatagggaaaatatgcgataatgatcgttatcaactcacagatatgacgaa 202  Q
    ||||||||||| ||||| || |||||||||||||||   |||  ||||||||| |||||||||||| |||||||||| | |||||||||    
T  28802610 actttaacatataaaatcataaaaatatcaataataacgataatgaaaatatgtgataatgatcgtcatcaactcactgttatgacgaa 28802522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 114 - 218
Target Start/End: Original strand, 36265553 - 36265657
Alignment:
Q  114 actttaacatagaaaattatcaaaatatcaataatattaatagggaaaatatgcgataatgatcgttatcaactcacagatatgacgaaagaactcaatt 213  Q
    ||||||||||| ||||| || |||||||||||||||   ||| |||||||| | |||||||||| | |||||||||||  ||||||||   ||||| |||    
T  36265553 actttaacatataaaatcataaaaatatcaataataacgataaggaaaataagtgataatgatcctcatcaactcacaactatgacgagtcaactccatt 36265652  T
Q  214 cctag 218  Q
    |||||    
T  36265653 cctag 36265657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 91
Target Start/End: Original strand, 8684 - 8753
Alignment:
Q  22 agaccataataatatcgatgactttaaacatgagcatcattgataagaaaaagttcaaagggtgtgttcc 91  Q
    ||||||||||| ||| ||||||||||||||| |  |||| ||| ||||||| ||||||||||||||||||    
T  8684 agaccataatagtattgatgactttaaacataaatatcaatgacaagaaaatgttcaaagggtgtgttcc 8753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 22 - 92
Target Start/End: Original strand, 11666 - 11736
Alignment:
Q  22 agaccataataatatcgatgactttaaacatgagcatcattgataagaaaaagttcaaagggtgtgttccc 92  Q
    ||||| ||||| ||| ||||||||||||||| |  |||| ||| ||||||| |||||||||||||||||||    
T  11666 agaccgtaatagtattgatgactttaaacataaatatcaatgacaagaaaatgttcaaagggtgtgttccc 11736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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