View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6875A_low_232 (Length: 239)
Name: NF6875A_low_232
Description: NF6875A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6875A_low_232 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 3271730 - 3271968
Alignment:
| Q |
1 |
atgaatagtttattactatcatttatggtatcatattcaatttgtaatggtattgaaatccaatctggacctctgtgaatgatcaatatatactcttcca |
100 |
Q |
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|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
3271730 |
atgaatagttcattactatcatttatggtatcctattcaatttgtaatggtattgaaatccaatctggagctctgtgaatgatcaatatatactcttcca |
3271829 |
T |
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| Q |
101 |
tcacatagagacaattgtttaagacattgaatttaagcagatgttctaacatttggacaaacggtgaatgcatggaacaaatgttaaaaacaaacacaaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
3271830 |
tcacatagagacaattgtttaagacattgaatttaagcagatgttctaacatttggacaaacggtgaatacatggaacaaatgttaaaaacaaacacaaa |
3271929 |
T |
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| Q |
201 |
acgctatgctgagctgtgagacaaagaatctaatatgat |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
3271930 |
acgctatgctgagctgtgagacaaagaatctaatatgat |
3271968 |
T |
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