View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6875A_low_235 (Length: 238)
Name: NF6875A_low_235
Description: NF6875A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6875A_low_235 |
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| [»] scaffold0110 (3 HSPs) |
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Alignment Details
Target: scaffold0110 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: scaffold0110
Description:
Target: scaffold0110; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 15 - 225
Target Start/End: Original strand, 13061 - 13271
Alignment:
| Q |
15 |
aaagattttgctgattatgcagatttttgttttaaaacatttggagacagagttaagaactggatgactttcaatgaaccaagagttattgctgcacttg |
114 |
Q |
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| T |
13061 |
aaagattttgcggattatgcagatttttgtttcaaaacatttggagacagagttaagaactggatgactttcaatgaaccaagagttattgctgcacttg |
13160 |
T |
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| Q |
115 |
gttatgatactggcttttttgcccctggaaggtgttcaaaagaatatggaaattgtactgctggaaattcaggaactgagccttatattgtagctcacaa |
214 |
Q |
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| T |
13161 |
gttatgatactggcttttttgcccctggaaggtgttcaaaagaatatggaaattgtactgctggaaattcaggaactgagccttatattgtagctcacaa |
13260 |
T |
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| Q |
215 |
tttgatattgt |
225 |
Q |
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||||||||||| |
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| T |
13261 |
tttgatattgt |
13271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 15 - 225
Target Start/End: Original strand, 20798 - 21008
Alignment:
| Q |
15 |
aaagattttgctgattatgcagatttttgttttaaaacatttggagacagagttaagaactggatgactttcaatgaaccaagagttattgctgcacttg |
114 |
Q |
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| T |
20798 |
aaagattttgcggattatgcagatttttgtttcaaaacatttggagacagagttaagaactggatgactttcaatgaaccaagagttattgctgcacttg |
20897 |
T |
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| Q |
115 |
gttatgatactggcttttttgcccctggaaggtgttcaaaagaatatggaaattgtactgctggaaattcaggaactgagccttatattgtagctcacaa |
214 |
Q |
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| T |
20898 |
gttatgatactggcttttttgcccctggaaggtgttcaaaagaatatggaaattgtactgctggaaattcaggaactgagccttatattgtagctcacaa |
20997 |
T |
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| Q |
215 |
tttgatattgt |
225 |
Q |
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| T |
20998 |
tttgatattgt |
21008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110; HSP #3
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 15 - 225
Target Start/End: Original strand, 29918 - 30128
Alignment:
| Q |
15 |
aaagattttgctgattatgcagatttttgttttaaaacatttggagacagagttaagaactggatgactttcaatgaaccaagagttattgctgcacttg |
114 |
Q |
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| T |
29918 |
aaagattttgcggattatgcagatttttgttttaagacatttggagacagagttaagaattggatgaccttcaatgaaccaagagttgttgctgcacttg |
30017 |
T |
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| Q |
115 |
gttatgatactggcttttttgcccctggaaggtgttcaaaagaatatggaaattgtactgctggaaattcaggaactgagccttatattgtagctcacaa |
214 |
Q |
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| T |
30018 |
gttatgataatggcttttttgcccctggaagatgttcaaaagaatatggaaattgtacagctggaaattcaggaactgagccttatactgtagctcacaa |
30117 |
T |
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| Q |
215 |
tttgatattgt |
225 |
Q |
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| T |
30118 |
tttgatattgt |
30128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 94
Target Start/End: Original strand, 31639068 - 31639108
Alignment:
| Q |
54 |
tttggagacagagttaagaactggatgactttcaatgaacc |
94 |
Q |
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| T |
31639068 |
tttggagacagagttaagcactggattaccttcaatgaacc |
31639108 |
T |
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