View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6875A_low_24 (Length: 420)
Name: NF6875A_low_24
Description: NF6875A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6875A_low_24 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 280; Significance: 1e-156; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 96 - 408
Target Start/End: Complemental strand, 12487356 - 12487042
Alignment:
| Q |
96 |
actcattcaaaagactacctaatgcattgtcgtactgtttgtga--ctactgtttacagcttcaacaacatgcatgaaatcaaatttcaatatgaactta |
193 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
12487356 |
actcattcaaaagactacctaatgcattgtcgtactgtttgtgagactactgtttacagcttcaacaacatgcatgcaatcaaatttcaatatgaactta |
12487257 |
T |
|
| Q |
194 |
gtgatggttcaagttcagtgtcatatcagtatttagtacacaactgcctgacagtaataagcatggatataacttaaaacaaaaacaattatcagaaagg |
293 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
12487256 |
gtgatggttcaagttctgtgtcatatcagtatttagtaaacaactgcctgacactaataagcatggatataacttaaaacaaaaacaattatcagcaagg |
12487157 |
T |
|
| Q |
294 |
aaggaaatttcacagttttggaggagctagaatcaaaaaacttatttgaaaatatatgacagagacctagctaatgaaacaaagtgcatgtatttcaaac |
393 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12487156 |
aaggaaatttcacaggtttggaggagctagaatcaaaaaacttatttgaaaatatatgacagagacctagctaatgaaacaaagtgcatgtatttcaaac |
12487057 |
T |
|
| Q |
394 |
catcccattgatatt |
408 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
12487056 |
catcccattgatatt |
12487042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 27 - 174
Target Start/End: Complemental strand, 12508545 - 12508401
Alignment:
| Q |
27 |
caactcaattggcttgtcgcctaataaaacttacctgaaagtcggtactagctaacaaaagctccttacactcattcaaaagactacctaatgcattgtc |
126 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| || ||||||||||||||||| |
|
|
| T |
12508545 |
caactcaattggcttgtcgcctaataaaacttacctgaaagtcggtactagctaacaaaagctccctacacttattcataatactacctaatgcattgtt |
12508446 |
T |
|
| Q |
127 |
gtactgtttgtgactactgtttacagcttcaacaacatgcatgaaatc |
174 |
Q |
| |
|
||||||| ||| || | |||||||||||||||||||||||| |||| |
|
|
| T |
12508445 |
gtactgtatgt---taatatttacagcttcaacaacatgcatgcaatc |
12508401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 2 - 85
Target Start/End: Complemental strand, 12541272 - 12541191
Alignment:
| Q |
2 |
atatttttaacttagagagtgatcgcaactcaattggcttgtcgcctaataaaacttacctgaaagtcggtactagctaacaaa |
85 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
12541272 |
atatttttaacttagagagtga--gcaactcaattggcttgtcacctaataaaacttacctgaaaggcggtactagctaacaaa |
12541191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 316 - 400
Target Start/End: Complemental strand, 12659415 - 12659332
Alignment:
| Q |
316 |
ggagctagaatcaaaaaacttatttgaaaatatatgacagagacctagctaatgaaacaaagtgcatgtatttcaaaccatccca |
400 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||||||| ||| | | ||||||||| ||||| | ||||||||||||||||| |
|
|
| T |
12659415 |
ggagctagaatcaaaatatatatttgaaaatatatgacataga-cgacctaatgaaataaagtttgtatatttcaaaccatccca |
12659332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 255 - 408
Target Start/End: Original strand, 14987117 - 14987262
Alignment:
| Q |
255 |
catggatataacttaaaacaaaaacaattatcagaaaggaaggaaatttcacagttttggaggagctagaatcaaaaaacttatttgaaaatatatgaca |
354 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||| || |||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||| ||| |
|
|
| T |
14987117 |
catgaatataactaaaaacaaaaacaattatcagcaacgaaggaaatttcacaggtttggaggagctagaataaaaaaac---tttgaaaatatataaca |
14987213 |
T |
|
| Q |
355 |
gagacctagctaatgaaacaaagtgcatgtatttcaaaccatcccattgatatt |
408 |
Q |
| |
|
| ||| ||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
14987214 |
gggac----ctaatgaaacaaagtgcatgtatttcaaaccat-ccattgatatt |
14987262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 255 - 315
Target Start/End: Complemental strand, 44551758 - 44551698
Alignment:
| Q |
255 |
catggatataacttaaaacaaaaacaattatcagaaaggaaggaaatttcacagttttgga |
315 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||| || |||||||||||||||| |||||| |
|
|
| T |
44551758 |
catgaatataactaaaaacaaaaacaattatcagcaacgaaggaaatttcacaggtttgga |
44551698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University