View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6875A_low_243 (Length: 232)
Name: NF6875A_low_243
Description: NF6875A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6875A_low_243 |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 23 - 227
Target Start/End: Original strand, 26324830 - 26325034
Alignment:
| Q |
23 |
aacaatatgaccacaatagtatctaacggtaatcaactgataataaatttgaaaagtcgtgtttcttggttttatttgcaaatcccaaataaaaaataac |
122 |
Q |
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| T |
26324830 |
aacaatatgaccacaatagtatctaacggtaatcaactgataataaatttgaaaagtcgtgtttcttggttttatttgcaaatcccaaataaaaaataac |
26324929 |
T |
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| Q |
123 |
cacgtttcaaaataaacaaactgaaacgacttcatgcaattttccaacggtaattaaccgtcaattgcacctctttgacatatatataatgatgtccatc |
222 |
Q |
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| T |
26324930 |
cacgtttcaaaataaacaaactgaaacgacttcatgcaattttccaacggtaattaaccgtcaattgcacctctttgacatatatataataatttccatc |
26325029 |
T |
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| Q |
223 |
tcatt |
227 |
Q |
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||||| |
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| T |
26325030 |
tcatt |
26325034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 141 - 198
Target Start/End: Complemental strand, 48320906 - 48320850
Alignment:
| Q |
141 |
aactgaaacgacttcatgcaattttccaacggtaattaaccgtcaattgcacctcttt |
198 |
Q |
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| T |
48320906 |
aactgaaacgacttcatgca-ttttcaaacggtaattaaccgccaattgcacctcttt |
48320850 |
T |
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