View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6875A_low_248 (Length: 231)
Name: NF6875A_low_248
Description: NF6875A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6875A_low_248 |
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Alignment Details
Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 24 - 224
Target Start/End: Original strand, 29222622 - 29222829
Alignment:
| Q |
24 |
ctcaaacaaaaaactatgagctaaaaacgactagccaagtaagctctcaactccaaaaccccattaaaacaccaagcca-------aggagatatgtaat |
116 |
Q |
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| T |
29222622 |
ctcaaacaaaaaacaacgagctaaaaatggctagccaagtaagctcccaactccaaaactttaataaa-caccaagccattttagaaggagatatgttat |
29222720 |
T |
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| Q |
117 |
ttgatcaatggtttttaaaataatttaaaggacaaccaaatacaaagaaatggttg-tacaaatataatgtctcttctaaaaagatagagatagctagaa |
215 |
Q |
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| T |
29222721 |
ttgatcaatcatttttaaaataatttaaaggacaactaaatacatacaaataaatgatacatatatcatttctcttctaaaaagacaaagatagctaaaa |
29222820 |
T |
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| Q |
216 |
caaactacc |
224 |
Q |
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||||||||| |
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| T |
29222821 |
caaactacc |
29222829 |
T |
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Target: chr4; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 152 - 224
Target Start/End: Original strand, 29226702 - 29226774
Alignment:
| Q |
152 |
ccaaatacaaagaaatggttgtacaaatataatgtctcttctaaaaagatagagatagctagaacaaactacc |
224 |
Q |
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|||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||| |
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| T |
29226702 |
ccaaatacaaagaaatggttgtacaaatatgatttctcttctaaaaagacagagatagctagaacaaactacc |
29226774 |
T |
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