View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6875A_low_252 (Length: 230)
Name: NF6875A_low_252
Description: NF6875A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6875A_low_252 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 179; Significance: 9e-97; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 22 - 212
Target Start/End: Complemental strand, 36971097 - 36970907
Alignment:
| Q |
22 |
cgatgaaggagataaaacgttgcccatagcgaatgtgggtagaataatgaagcaaaatcttcctcccaatgcaaagatctcaaaagaaagcaaacagttg |
121 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36971097 |
cgatgagggagataaaacgttgcccatagcgaatgtgggtagaataatgaagcaaaatcttcctcccaatgcaaagatctcaaaagaaagcaaacagttg |
36970998 |
T |
|
| Q |
122 |
atgcaagaatgtgcgacagagttcataagtttcgtgacaggtgaagcatctgacaagtgtcacaaggagaagcgcaagaccgttaatgggg |
212 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
36970997 |
atgcaagaatgtgcgacagaattcataagtttcgtgacaggtgaagcatctgacaagtgtcacaaggagaatcgcaagaccgttaatgggg |
36970907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 161 - 210
Target Start/End: Complemental strand, 39786381 - 39786332
Alignment:
| Q |
161 |
ggtgaagcatctgacaagtgtcacaaggagaagcgcaagaccgttaatgg |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
39786381 |
ggtgaagcatctgacaagtgtcacaaggagaagcgcaagacagtgaatgg |
39786332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 193
Target Start/End: Original strand, 56067978 - 56068050
Alignment:
| Q |
121 |
gatgcaagaatgtgcgacagagttcataagtttcgtgacaggtgaagcatctgacaagtgtcacaaggagaag |
193 |
Q |
| |
|
||||||||| |||| ||||||||||||| ||| | ||||||||||||||||| |||||||| || |||||| |
|
|
| T |
56067978 |
gatgcaagagtgtgtatcagagttcataagcttcataacaggtgaagcatctgaaaagtgtcagaaagagaag |
56068050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University