View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6875A_low_253 (Length: 230)
Name: NF6875A_low_253
Description: NF6875A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6875A_low_253 |
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Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 211
Target Start/End: Complemental strand, 32473071 - 32472878
Alignment:
| Q |
18 |
acaatctaccccaacacaccttccatcatctacaacgacaccgttttcacatggtctcaaacccacaaacgatgcctccaacttgcctccgccatcacct |
117 |
Q |
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| T |
32473071 |
acaatctaccccaacacaccttccatcatctacaacgacaccgttttcacatggtctcaaacccacaaacgatgcctccaacttgcctccgccatcacct |
32472972 |
T |
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| Q |
118 |
ccttaggtatccgccgcggcaacgtcgtctccgtcatcgctcccaacatccccgccatgtatgaactccacttcgccgttcccttcaccggagc |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
32472971 |
ccttaggtatccgccgcggcaacgtcgtctccgtcatcgctcccaacatccccgccatgtatgaactccacttcgccgtccccttcaccggagc |
32472878 |
T |
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