View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6875A_low_262 (Length: 229)
Name: NF6875A_low_262
Description: NF6875A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6875A_low_262 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 31658744 - 31658972
Alignment:
| Q |
1 |
tatgaggttatctgatgagaacaattgattttgagaagaataatcatcatgaatctcttccttaggatcctctattgtagatgcaagaaatggcaatggt |
100 |
Q |
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| T |
31658744 |
tatgaggttatctgatgagaacaattgattttgagaagaataatcatcatgaatctcttccttaggatcctcttttgtagatgcaagaaatggcaatggt |
31658843 |
T |
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| Q |
101 |
gatggtggaaacgagttttcttctttaattggaatgttgttatcaaaactgagtaatatagaagagtcatttgatgacacaatggattccaaatttatat |
200 |
Q |
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| T |
31658844 |
gatggtggaaacgagttttcttctttaattggaatgttgttatcaaaactaagtaatatagaagagtcatttgatgacaaaatggattccaaatttatat |
31658943 |
T |
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| Q |
201 |
ctgaatgcaaataacttttgcaagtgtga |
229 |
Q |
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| T |
31658944 |
ctgaatgcaaataacttttgcaagtgtga |
31658972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 16 - 169
Target Start/End: Complemental strand, 31650457 - 31650298
Alignment:
| Q |
16 |
tgagaacaattgattttgagaagaataatcatcatgaatctcttccttaggatcctctattgtagatgcaagaaatggcaat---ggtgatggtggaaac |
112 |
Q |
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| T |
31650457 |
tgagaacaattggttttgaggaaaatgatcatgatgtatctcttccttgggatctccttttgtagatgcaagaagtggcaatggtggtgatggtcgaaat |
31650358 |
T |
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| Q |
113 |
gagttttcttctttaattggaatgttg---ttatcaaaactgagtaatatagaagagtca |
169 |
Q |
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| T |
31650357 |
ggatattcttgtttatttgaaatgttgttattatcgaaactaagtaatattgaagagtca |
31650298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 133 - 229
Target Start/End: Complemental strand, 31657342 - 31657246
Alignment:
| Q |
133 |
aatgttgttatcaaaactgagtaatatagaagagtcatttgatgacacaatggattccaaatttatatctgaatgcaaataacttttgcaagtgtga |
229 |
Q |
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| T |
31657342 |
aatgttgttatcgaaactaagtaatatagaagagtcatcgtagcacaaaatggattccaattttatgtctgaatggtaagagcttttgcaagtgtga |
31657246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 97
Target Start/End: Complemental strand, 31657434 - 31657390
Alignment:
| Q |
53 |
atctcttccttaggatcctctattgtagatgcaagaaatggcaat |
97 |
Q |
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| T |
31657434 |
atctcttccttgggttcctcttttgtagatgcaagaagtggcaat |
31657390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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