View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6875A_low_27 (Length: 415)
Name: NF6875A_low_27
Description: NF6875A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6875A_low_27 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 6 - 415
Target Start/End: Complemental strand, 37308716 - 37308307
Alignment:
| Q |
6 |
agaagcatagagaacaatagtaagccattttttagtttcattgagtcaataagagacagaaaatcaaaatggcttctgaagtaaagcaagaaggataaaa |
105 |
Q |
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|||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
37308716 |
agaaacataaagaacaatagtaaaccattttttagtttcattgagtcaataagagacagaaaatcaaaatggcttctgaagtaaagcaagaaggagaaaa |
37308617 |
T |
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| Q |
106 |
agaaattaactcaaataaccttaaacttgatttctagactctatatataattgattcacgtatactcgtgactttgatattatccttgattgtattatac |
205 |
Q |
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| T |
37308616 |
agaaattaactcaaataaccttaaacttgatttctagactctatatatatttgattcacgtatactcgtgactttgatattatccttgattgtattatac |
37308517 |
T |
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| Q |
206 |
acgttattgctaatgatagcacaaaagtttatttttctagaaaaaattgtatatttattttgatgttagaaattgcttaatacaccttgcaacgccaatc |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37308516 |
acgttattgctaatgatagcacaaaagtttatttttctagaaaaaattgtatatttattttgatgttagaaattgcttaatacaccttgcaacgccaatc |
37308417 |
T |
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| Q |
306 |
ctgtcggcagctgtgaaaccatttcgcattgtgccactccataactacaacaaacaccataatttccatttttaattataatccaagtcaatgcatatgt |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
37308416 |
ctgtcggcagctgtgaaaccatttcgcattgtgccactccataactacaacaaacaccataatttccattttaaattataatccaagtcaatgcatatgt |
37308317 |
T |
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| Q |
406 |
acttcgttga |
415 |
Q |
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| T |
37308316 |
gcttcgttga |
37308307 |
T |
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