View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6875A_low_274 (Length: 227)

Name: NF6875A_low_274
Description: NF6875A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6875A_low_274
NF6875A_low_274
[»] chr7 (1 HSPs)
chr7 (15-210)||(45111775-45111970)
[»] scaffold0583 (1 HSPs)
scaffold0583 (15-210)||(6509-6704)
[»] chr1 (1 HSPs)
chr1 (15-118)||(16047492-16047595)
[»] chr2 (1 HSPs)
chr2 (15-127)||(39436113-39436225)
[»] scaffold0356 (1 HSPs)
scaffold0356 (15-118)||(3341-3444)
[»] chr8 (2 HSPs)
chr8 (15-118)||(14105914-14106017)
chr8 (15-118)||(33855673-33855776)
[»] chr4 (1 HSPs)
chr4 (15-118)||(31927292-31927395)
[»] chr3 (1 HSPs)
chr3 (15-118)||(41757655-41757758)


Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 15 - 210
Target Start/End: Complemental strand, 45111970 - 45111775
Alignment:
Q  15 acatcataagtaaataatatcttttccaatcggtcatgatattatttgaccataatttaagcaatcaaccgttataaatcatctatgatatttatttgca 114  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  45111970 acatcataagtaaataatatcttttccaatcagtcatgatattatttgaccataatttaagcaatcaaccattataaatcatctatgatatttatttgca 45111871  T
Q  115 tgatattatttaagcaatcagccatgatactatttgcatgattttattttccgatgcacgaataaccaatctaagcaatcaaccatttatgatatt 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45111870 tgatattatttaagcaatcagccatgatactatttgcatgattttattttccgatgcacgaataaccaatctaagcaatcaaccatttatgatatt 45111775  T

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Target: scaffold0583 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: scaffold0583
Description:

Target: scaffold0583; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 15 - 210
Target Start/End: Complemental strand, 6704 - 6509
Alignment:
Q  15 acatcataagtaaataatatcttttccaatcggtcatgatattatttgaccataatttaagcaatcaaccgttataaatcatctatgatatttatttgca 114  Q
    ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  6704 acatcataagtaaataatatcttttccaatcagttatgatattatttgaccataatttaagcaatcaaccattataaatcatctatgatatttatttgca 6605  T
Q  115 tgatattatttaagcaatcagccatgatactatttgcatgattttattttccgatgcacgaataaccaatctaagcaatcaaccatttatgatatt 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6604 tgatattatttaagcaatcagccatgatactatttgcatgattttattttccgatgcacgaataaccaatctaagcaatcaaccatttatgatatt 6509  T

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Target: chr1 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 15 - 118
Target Start/End: Original strand, 16047492 - 16047595
Alignment:
Q  15 acatcataagtaaataatatcttttccaatcggtcatgatattatttgaccataatttaagcaatcaaccgttataaatcatctatgatatttatttgca 114  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  16047492 acatcataagtaaataatatcttttccaatcagtcatgatattatttgaccataatttaagcaatcaaccattataaatcatctatgatatttatttgca 16047591  T
Q  115 tgat 118  Q
    ||||    
T  16047592 tgat 16047595  T

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Target: chr2 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 15 - 127
Target Start/End: Complemental strand, 39436225 - 39436113
Alignment:
Q  15 acatcataagtaaataatatcttttccaatcggtcatgatattatttgaccataatttaagcaatcaaccgttataaatcatctatgatatttatttgca 114  Q
    |||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  39436225 acatcataagtaaataatatattttccaattggtcataatattatttgaccataatttaagcaatcaaccattataaatcgtctatgatatttatttgca 39436126  T
Q  115 tgatattatttaa 127  Q
    |||||||||||||    
T  39436125 tgatattatttaa 39436113  T

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Target: scaffold0356 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: scaffold0356
Description:

Target: scaffold0356; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 15 - 118
Target Start/End: Complemental strand, 3444 - 3341
Alignment:
Q  15 acatcataagtaaataatatcttttccaatcggtcatgatattatttgaccataatttaagcaatcaaccgttataaatcatctatgatatttatttgca 114  Q
    |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  3444 acatcataagtaaataatattttttccaatcagtcatgatattatttgaccataatttaagcaatcaaccattataaatcatctatgatatttatttgca 3345  T
Q  115 tgat 118  Q
    ||||    
T  3344 tgat 3341  T

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Target: chr8 (Bit Score: 92; Significance: 8e-45; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 15 - 118
Target Start/End: Complemental strand, 14106017 - 14105914
Alignment:
Q  15 acatcataagtaaataatatcttttccaatcggtcatgatattatttgaccataatttaagcaatcaaccgttataaatcatctatgatatttatttgca 114  Q
    |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  14106017 acatcataagtaaataatattttttccaatcagtcatgatattatttgaccataatttaagcaatcaaccattataaatcatctatgatatttatttgca 14105918  T
Q  115 tgat 118  Q
    ||||    
T  14105917 tgat 14105914  T

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Target: chr8; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 15 - 118
Target Start/End: Complemental strand, 33855776 - 33855673
Alignment:
Q  15 acatcataagtaaataatatcttttccaatcggtcatgatattatttgaccataatttaagcaatcaaccgttataaatcatctatgatatttatttgca 114  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  33855776 acatcataagtgaataatatcttttccaatcagtcatgatattatttgaccataatttaagcaatcaaccattataaatcatctatgatatttatttgca 33855677  T
Q  115 tgat 118  Q
    ||||    
T  33855676 tgat 33855673  T

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Target: chr4 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 15 - 118
Target Start/End: Original strand, 31927292 - 31927395
Alignment:
Q  15 acatcataagtaaataatatcttttccaatcggtcatgatattatttgaccataatttaagcaatcaaccgttataaatcatctatgatatttatttgca 114  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  31927292 acatcataagtgaataatatcttttccaatcagtcatgatattatttgaccataatttaagcaatcaaccattataaatcatctatgatatttatttgca 31927391  T
Q  115 tgat 118  Q
    ||||    
T  31927392 tgat 31927395  T

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Target: chr3 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 15 - 118
Target Start/End: Complemental strand, 41757758 - 41757655
Alignment:
Q  15 acatcataagtaaataatatcttttccaatcggtcatgatattatttgaccataatttaagcaatcaaccgttataaatcatctatgatatttatttgca 114  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  41757758 acatcataagtgaataatatcttttccaatcagtcatgatattatttgaccataatttaagcaatcaaccattataaatcatctatgatatttatttgca 41757659  T
Q  115 tgat 118  Q
    ||||    
T  41757658 tgat 41757655  T

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