View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6875A_low_275 (Length: 226)

Name: NF6875A_low_275
Description: NF6875A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6875A_low_275
NF6875A_low_275
[»] chr6 (2 HSPs)
chr6 (2-213)||(7519467-7519678)
chr6 (19-213)||(7528838-7529032)
[»] chr4 (1 HSPs)
chr4 (19-213)||(4231810-4232004)
[»] chr1 (12 HSPs)
chr1 (19-213)||(43045337-43045531)
chr1 (19-213)||(43045790-43045984)
chr1 (19-213)||(43084218-43084412)
chr1 (19-213)||(3301073-3301267)
chr1 (19-213)||(43066423-43066617)
chr1 (19-206)||(45983467-45983654)
chr1 (38-196)||(7890809-7890967)
chr1 (19-193)||(38137628-38137802)
chr1 (19-213)||(45993240-45993434)
chr1 (47-213)||(40034448-40034612)
chr1 (45-194)||(7888546-7888695)
chr1 (45-214)||(51291985-51292153)
[»] chr8 (3 HSPs)
chr8 (19-196)||(4620033-4620210)
chr8 (45-196)||(1846761-1846912)
chr8 (69-196)||(4787275-4787402)
[»] chr2 (3 HSPs)
chr2 (19-213)||(34691170-34691362)
chr2 (19-213)||(34713582-34713774)
chr2 (69-196)||(16232567-16232694)
[»] chr5 (1 HSPs)
chr5 (19-193)||(16349482-16349656)


Alignment Details
Target: chr6 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 2 - 213
Target Start/End: Complemental strand, 7519678 - 7519467
Alignment:
Q  2 gtcaatgagatggacatcacaatcagcctgggaggttccagtaatcatgttcttgatgaaatcacgatgtccaggagcatcaatgactgtgcagtagtac 101  Q
    |||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  7519678 gtcaatgataaggacagcacaatcagcctgggaggttccagtaatcatgttcttgatgaaatcacgatgtccgggagcatcaatgactgtgcagtagtac 7519579  T
Q  102 ttggtggtctcaaatttccacaatgcaatatcaatggtaattcctctttcacgctcagccttaagcttgtcaaggacccatgcgtacttgaatgacctct 201  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  7519578 ttggtggtctcaaatttccacaaagcaatatcaatggtaattcctctttcacgctcagccttaagcttgtcaagaacccatgcgtacttgaaagacctct 7519479  T
Q  202 tgttcttctcag 213  Q
    ||||| ||||||    
T  7519478 tgttcatctcag 7519467  T

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Target: chr6; HSP #2
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 19 - 213
Target Start/End: Complemental strand, 7529032 - 7528838
Alignment:
Q  19 cacaatcagcctgggaggttccagtaatcatgttcttgatgaaatcacgatgtccaggagcatcaatgactgtgcagtagtacttggtggtctcaaattt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  7529032 cacaatcagcctgggaggttccagtaatcatgttcttgatgaaatcacgatgtccgggagcatcaatgactgtgcagtagtacttggtggtctcaaattt 7528933  T
Q  119 ccacaatgcaatatcaatggtaattcctctttcacgctcagccttaagcttgtcaaggacccatgcgtacttgaatgacctcttgttcttctcag 213  Q
    |||||| |||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||| | ||||||| ||||||    
T  7528932 ccacaaggcaatatcgatggtaattcctctttcacgctcagccttaagtttgtcaagaacccatgcatacttgaatgaacgcttgttcatctcag 7528838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 19 - 213
Target Start/End: Original strand, 4231810 - 4232004
Alignment:
Q  19 cacaatcagcctgggaggttccagtaatcatgttcttgatgaaatcacgatgtccaggagcatcaatgactgtgcagtagtacttggtggtctcaaattt 118  Q
    |||||||||| ||||| || ||||||||||||||||| |||||||| |  |||||||| ||||||||||| |||||||||||||| ||||||||||| ||    
T  4231810 cacaatcagcttgggatgtaccagtaatcatgttcttaatgaaatccctgtgtccaggggcatcaatgacagtgcagtagtacttagtggtctcaaactt 4231909  T
Q  119 ccacaatgcaatatcaatggtaattcctctttcacgctcagccttaagcttgtcaaggacccatgcgtacttgaatgacctcttgttcttctcag 213  Q
    |||||  ||||| ||||| || || |||||||||||||||||||| ||||||||||| ||||| || ||||| ||||| | ||||||| ||||||    
T  4231910 ccacagagcaatgtcaattgtgatacctctttcacgctcagccttgagcttgtcaagaacccaagcatacttaaatgaacgcttgttcatctcag 4232004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 87; Significance: 7e-42; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 19 - 213
Target Start/End: Original strand, 43045337 - 43045531
Alignment:
Q  19 cacaatcagcctgggaggttccagtaatcatgttcttgatgaaatcacgatgtccaggagcatcaatgactgtgcagtagtacttggtggtctcaaattt 118  Q
    |||||||||| ||||| ||||| || ||||||||||| |||||||| |  ||||| || ||||| ||||| ||||||||||||||||| |||||||| ||    
T  43045337 cacaatcagcttgggatgttccggtgatcatgttcttaatgaaatccctgtgtccgggggcatcgatgacagtgcagtagtacttggttgtctcaaactt 43045436  T
Q  119 ccacaatgcaatatcaatggtaattcctctttcacgctcagccttaagcttgtcaaggacccatgcgtacttgaatgacctcttgttcttctcag 213  Q
    ||| |  ||||| |||||||| || ||||||||||| |||||||| ||||||||||||||||| || ||||||||||| | ||||||| ||||||    
T  43045437 ccagagagcaatgtcaatggtgatacctctttcacgttcagccttgagcttgtcaaggacccaggcatacttgaatgaacgcttgttcatctcag 43045531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 19 - 213
Target Start/End: Original strand, 43045790 - 43045984
Alignment:
Q  19 cacaatcagcctgggaggttccagtaatcatgttcttgatgaaatcacgatgtccaggagcatcaatgactgtgcagtagtacttggtggtctcaaattt 118  Q
    |||||||||| ||||| ||||| || ||||||||||| |||||||| |  ||||| || ||||| ||||| ||||||||||||||||| |||||||| ||    
T  43045790 cacaatcagcttgggatgttccggtgatcatgttcttaatgaaatccctgtgtccgggggcatcgatgacagtgcagtagtacttggttgtctcaaactt 43045889  T
Q  119 ccacaatgcaatatcaatggtaattcctctttcacgctcagccttaagcttgtcaaggacccatgcgtacttgaatgacctcttgttcttctcag 213  Q
    ||| |  ||||| |||||||| || ||||||||||| |||||||| ||||||||||||||||| || ||||||||||| | ||||||| ||||||    
T  43045890 ccagagagcaatgtcaatggtgatacctctttcacgttcagccttgagcttgtcaaggacccaggcatacttgaatgaacgcttgttcatctcag 43045984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 19 - 213
Target Start/End: Original strand, 43084218 - 43084412
Alignment:
Q  19 cacaatcagcctgggaggttccagtaatcatgttcttgatgaaatcacgatgtccaggagcatcaatgactgtgcagtagtacttggtggtctcaaattt 118  Q
    |||||||||| ||||| ||||| || ||||||||||| |||||||| |  ||||| || ||||| ||||| ||||||||||||||||| |||||||| ||    
T  43084218 cacaatcagcttgggatgttccggtgatcatgttcttaatgaaatccctgtgtccgggggcatcgatgacagtgcagtagtacttggttgtctcaaactt 43084317  T
Q  119 ccacaatgcaatatcaatggtaattcctctttcacgctcagccttaagcttgtcaaggacccatgcgtacttgaatgacctcttgttcttctcag 213  Q
    ||| |  ||||| |||||||| || ||||||||||| |||||||| ||||||||||||||||| || ||||||||||| | ||||||| ||||||    
T  43084318 ccagagagcaatgtcaatggtgatacctctttcacgttcagccttgagcttgtcaaggacccaggcatacttgaatgaacgcttgttcatctcag 43084412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 19 - 213
Target Start/End: Original strand, 3301073 - 3301267
Alignment:
Q  19 cacaatcagcctgggaggttccagtaatcatgttcttgatgaaatcacgatgtccaggagcatcaatgactgtgcagtagtacttggtggtctcaaattt 118  Q
    |||||||||| ||||| |||||||||||||||||||| |||||||| |  ||||| || ||||||||||| |||||||||||||| || |||||||| ||    
T  3301073 cacaatcagcttgggatgttccagtaatcatgttcttaatgaaatccctgtgtccgggggcatcaatgacagtgcagtagtacttagtagtctcaaactt 3301172  T
Q  119 ccacaatgcaatatcaatggtaattcctctttcacgctcagccttaagcttgtcaaggacccatgcgtacttgaatgacctcttgttcttctcag 213  Q
    |||||  ||||| ||||| || || ||||||||||  |||||||| |||||||| || ||||| || ||||||||||| | ||||||| ||||||    
T  3301173 ccacagagcaatgtcaattgtgatacctctttcacattcagccttgagcttgtcgagcacccaagcatacttgaatgaacgcttgttcatctcag 3301267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 19 - 213
Target Start/End: Complemental strand, 43066617 - 43066423
Alignment:
Q  19 cacaatcagcctgggaggttccagtaatcatgttcttgatgaaatcacgatgtccaggagcatcaatgactgtgcagtagtacttggtggtctcaaattt 118  Q
    |||||||||| ||||| ||||| || ||||||||||| |||||||| |  ||||| || ||||| ||||| ||||||||||||||||| |||||||| ||    
T  43066617 cacaatcagcttgggatgttccggtgatcatgttcttaatgaaatccctgtgtccgggggcatcgatgacagtgcagtagtacttggttgtctcaaactt 43066518  T
Q  119 ccacaatgcaatatcaatggtaattcctctttcacgctcagccttaagcttgtcaaggacccatgcgtacttgaatgacctcttgttcttctcag 213  Q
    ||| |  ||||| |||||||| || ||||||||||| |||||||| ||||||||||| ||||| || ||||||||||| | ||||||| ||||||    
T  43066517 ccagagagcaatgtcaatggtgatacctctttcacgttcagccttgagcttgtcaagaacccaggcatacttgaatgaacgcttgttcatctcag 43066423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 19 - 206
Target Start/End: Complemental strand, 45983654 - 45983467
Alignment:
Q  19 cacaatcagcctgggaggttccagtaatcatgttcttgatgaaatcacgatgtccaggagcatcaatgactgtgcagtagtacttggtggtctcaaattt 118  Q
    |||| ||||| ||||| ||||| || ||||||||||| |||||||| |  ||||| || ||||||||||| ||||||| ||||||| | |||||||| ||    
T  45983654 cacagtcagcttgggacgttccggtgatcatgttcttaatgaaatccctgtgtccgggggcatcaatgacagtgcagttgtacttgtttgtctcaaactt 45983555  T
Q  119 ccacaatgcaatatcaatggtaattcctctttcacgctcagccttaagcttgtcaaggacccatgcgtacttgaatgacctcttgttc 206  Q
    | |||  | ||| ||||| ||||  ||||||||||| |||||||| ||||||||||| ||||| || ||||||||||| | |||||||    
T  45983554 cgacagggtaatgtcaattgtaacacctctttcacgttcagccttgagcttgtcaagcacccaagcatacttgaatgaacgcttgttc 45983467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 38 - 196
Target Start/End: Complemental strand, 7890967 - 7890809
Alignment:
Q  38 tccagtaatcatgttcttgatgaaatcacgatgtccaggagcatcaatgactgtgcagtagtacttggtggtctcaaatttccacaatgcaatatcaatg 137  Q
    |||||| ||||||||||| |||||||| |  |||||||| ||||||||||  ||||||  | | ||||| |||||||| |||||||  | ||| |||||     
T  7890967 tccagtgatcatgttcttaatgaaatccctgtgtccaggggcatcaatgagagtgcagcggaagttggttgtctcaaacttccacagagaaatgtcaatt 7890868  T
Q  138 gtaattcctctttcacgctcagccttaagcttgtcaaggacccatgcgtacttgaatga 196  Q
    || || |||||||||||||| ||||| ||||||||||| ||||| || |||||||||||    
T  7890867 gtgatacctctttcacgctcggccttgagcttgtcaagcacccaagcatacttgaatga 7890809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 19 - 193
Target Start/End: Complemental strand, 38137802 - 38137628
Alignment:
Q  19 cacaatcagcctgggaggttccagtaatcatgttcttgatgaaatcacgatgtccaggagcatcaatgactgtgcagtagtacttggtggtctcaaattt 118  Q
    |||| ||||| ||||| || || |||||||||||||| |||||||| |  ||||| || ||||||||||  ||||||||||||||||| |||||||| ||    
T  38137802 cacagtcagcttgggacgtcccggtaatcatgttcttaatgaaatccctgtgtccgggggcatcaatgagagtgcagtagtacttggtagtctcaaactt 38137703  T
Q  119 ccacaatgcaatatcaatggtaattcctctttcacgctcagccttaagcttgtcaaggacccatgcgtacttgaa 193  Q
      |||  | ||| ||||| || || |||||||||||||| ||||| |||||||| || ||||| || ||||||||    
T  38137702 tgacagagaaatgtcaatagtgatacctctttcacgctcggccttgagcttgtcgagcacccaagcatacttgaa 38137628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 19 - 213
Target Start/End: Complemental strand, 45993434 - 45993240
Alignment:
Q  19 cacaatcagcctgggaggttccagtaatcatgttcttgatgaaatcacgatgtccaggagcatcaatgactgtgcagtagtacttggtggtctcaaattt 118  Q
    |||||||||| ||||| || || || ||||||||||| |||||||| |  ||||| |  ||||||||||| ||||||  ||||||| | |||||||| ||    
T  45993434 cacaatcagcttgggacgtcccggtgatcatgttcttaatgaaatccctgtgtccggaggcatcaatgacagtgcagctgtacttgtttgtctcaaactt 45993335  T
Q  119 ccacaatgcaatatcaatggtaattcctctttcacgctcagccttaagcttgtcaaggacccatgcgtacttgaatgacctcttgttcttctcag 213  Q
    | |||| | | | ||||| || || |||||||||||||||| ||| ||||||||||| ||||| || ||||||||||| | |||| || ||||||    
T  45993334 cgacaaagaactgtcaattgtgatacctctttcacgctcagtcttgagcttgtcaagcacccaagcatacttgaatgaacgcttgatcatctcag 45993240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 47 - 213
Target Start/End: Complemental strand, 40034612 - 40034448
Alignment:
Q  47 catgttcttgatgaaatcacgatgtccaggagcatcaatgactgtgcagtagtacttggtggtctcaaatttccacaatgcaatatcaatggtaattcct 146  Q
    ||||||||||||||||||    ||||| || || |||||||  ||||||| ||| ||||| |||||||| ||  |||  | ||||||||| ||||  |||    
T  40034612 catgttcttgatgaaatctg--tgtccgggggcgtcaatgagagtgcagtggtatttggttgtctcaaacttggacatggaaatatcaattgtaacacct 40034515  T
Q  147 ctttcacgctcagccttaagcttgtcaaggacccatgcgtacttgaatgacctcttgttcttctcag 213  Q
    ||||||||||||||||| ||||||||||| ||||| || ||||||||||| | ||||||| ||||||    
T  40034514 ctttcacgctcagccttgagcttgtcaagtacccaagcatacttgaatgagcgcttgttcatctcag 40034448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 45 - 194
Target Start/End: Complemental strand, 7888695 - 7888546
Alignment:
Q  45 atcatgttcttgatgaaatcacgatgtccaggagcatcaatgactgtgcagtagtacttggtggtctcaaatttccacaatgcaatatcaatggtaattc 144  Q
    |||||||||||||||||||| |  ||||| || ||||||||||  |||||| ||||  |||| |||| ||| ||||| |  | ||| ||||| || || |    
T  7888695 atcatgttcttgatgaaatccctgtgtccgggggcatcaatgagagtgcagcagtagctggttgtctgaaacttccaaagagaaatgtcaattgtgatac 7888596  T
Q  145 ctctttcacgctcagccttaagcttgtcaaggacccatgcgtacttgaat 194  Q
    ||||||||||||||||||| || |||||||| ||||| || |||||||||    
T  7888595 ctctttcacgctcagccttgagtttgtcaagcacccaagcatacttgaat 7888546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 214
Target Start/End: Original strand, 51291985 - 51292153
Alignment:
Q  45 atcatgttcttgatgaaatcacgatgtccaggagcatcaatgactgtgcagtagtacttggtggtctcaaatttccacaatgcaatatcaatggtaattc 144  Q
    ||||||||||| |||||||  | |||||| || ||||||||||  ||||| ||||||||| | || ||||| ||  | |  | ||| ||||| || || |    
T  51291985 atcatgttcttaatgaaattcccatgtccgggggcatcaatgagagtgcaatagtacttgattgt-tcaaacttggatagagaaatgtcaattgtgatac 51292083  T
Q  145 ctctttcacgctcagccttaagcttgtcaaggacccatgcgtacttgaatgacctcttgttcttctcagt 214  Q
    ||||||||||||||||||| | ||||||||| ||||| || ||| ||||||| | | ||||| |||||||    
T  51292084 ctctttcacgctcagccttgaacttgtcaagcacccaagcatacgtgaatgaacgcatgttcatctcagt 51292153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 1e-24; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 19 - 196
Target Start/End: Original strand, 4620033 - 4620210
Alignment:
Q  19 cacaatcagcctgggaggttccagtaatcatgttcttgatgaaatcacgatgtccaggagcatcaatgactgtgcagtagtacttggtggtctcaaattt 118  Q
    |||| ||||| ||||| ||||| || ||||||||||| |||||||| |  ||||| || ||||||||||  ||||||||||||||||| |||||||| ||    
T  4620033 cacagtcagcttgggatgttccggtgatcatgttcttaatgaaatctctgtgtccgggggcatcaatgagagtgcagtagtacttggttgtctcaaactt 4620132  T
Q  119 ccacaatgcaatatcaatggtaattcctctttcacgctcagccttaagcttgtcaaggacccatgcgtacttgaatga 196  Q
      |||  | ||| || || || || |||||||||||||||||||| ||||||||||| ||||| || || ||||||||    
T  4620133 ggacagagaaatgtcgattgtgatacctctttcacgctcagccttgagcttgtcaagcacccaagcatatttgaatga 4620210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 45 - 196
Target Start/End: Original strand, 1846761 - 1846912
Alignment:
Q  45 atcatgttcttgatgaaatcacgatgtccaggagcatcaatgactgtgcagtagtacttggtggtctcaaatttccacaatgcaatatcaatggtaattc 144  Q
    ||||||||||| |||||||| |  ||||| || ||||||||||  ||||||  | | ||||| |||||||| ||||| |  | ||| ||||| || || |    
T  1846761 atcatgttcttaatgaaatccctgtgtccgggggcatcaatgagagtgcagaggaagttggttgtctcaaacttccatagagaaatgtcaattgtgatac 1846860  T
Q  145 ctctttcacgctcagccttaagcttgtcaaggacccatgcgtacttgaatga 196  Q
    ||||||||||||| ||||| ||||||||||| ||||| || |||||||||||    
T  1846861 ctctttcacgctcggccttgagcttgtcaagcacccaagcatacttgaatga 1846912  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 69 - 196
Target Start/End: Complemental strand, 4787402 - 4787275
Alignment:
Q  69 tgtccaggagcatcaatgactgtgcagtagtacttggtggtctcaaatttccacaatgcaatatcaatggtaattcctctttcacgctcagccttaagct 168  Q
    ||||| |||||||||||||| ||||||| ||||||| | |||||||| ||  |||  | ||| ||||| ||    ||||||||||||||| |||| || |    
T  4787402 tgtccgggagcatcaatgacagtgcagttgtacttgtttgtctcaaacttggacatagaaatgtcaattgtggcacctctttcacgctcacccttgagtt 4787303  T
Q  169 tgtcaaggacccatgcgtacttgaatga 196  Q
    ||||||| ||||| || |||||||||||    
T  4787302 tgtcaagcacccaagcatacttgaatga 4787275  T

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Target: chr2 (Bit Score: 56; Significance: 2e-23; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 19 - 213
Target Start/End: Original strand, 34691170 - 34691362
Alignment:
Q  19 cacaatcagcctgggaggttccagtaatcatgttcttgatgaaatcacgatgtccaggagcatcaatgactgtgcagtagtacttggtggtctcaaattt 118  Q
    |||| ||||| |||||||| || || ||||||||||| |||||||| |  ||||| |||||||||||||  ||| || |||||||||| |||||||| ||    
T  34691170 cacagtcagcttgggaggtcccggtgatcatgttcttaatgaaatccctgtgtccgggagcatcaatgagagtgaagcagtacttggttgtctcaaactt 34691269  T
Q  119 ccacaatgcaatatcaatggtaattcctctttcacgctcagccttaagcttgtcaaggacccatgcgtacttgaatgacctcttgttcttctcag 213  Q
     || |  | ||| ||||| || || ||||||||||||||||| || ||||||||||| ||||| || ||||||||||| | ||| ||| ||||||    
T  34691270 gcata--gaaatgtcaattgtgatacctctttcacgctcagcgttgagcttgtcaagcacccaagcatacttgaatgaacgcttcttcatctcag 34691362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 19 - 213
Target Start/End: Original strand, 34713582 - 34713774
Alignment:
Q  19 cacaatcagcctgggaggttccagtaatcatgttcttgatgaaatcacgatgtccaggagcatcaatgactgtgcagtagtacttggtggtctcaaattt 118  Q
    |||| ||||| |||||||| || || ||||||||||| |||||||| |  ||||| |||||||||||||  ||| || |||||||||| |||||||| ||    
T  34713582 cacagtcagcttgggaggtcccggtgatcatgttcttaatgaaatccctgtgtccgggagcatcaatgagagtgaagcagtacttggttgtctcaaactt 34713681  T
Q  119 ccacaatgcaatatcaatggtaattcctctttcacgctcagccttaagcttgtcaaggacccatgcgtacttgaatgacctcttgttcttctcag 213  Q
     || |  | ||| ||||| || || ||||||||||||||||| || ||||||||||| ||||| || ||||||||||| | ||| ||| ||||||    
T  34713682 gcata--gaaatgtcaattgtgatacctctttcacgctcagcgttgagcttgtcaagcacccaagcatacttgaatgaacgcttcttcatctcag 34713774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 69 - 196
Target Start/End: Original strand, 16232567 - 16232694
Alignment:
Q  69 tgtccaggagcatcaatgactgtgcagtagtacttggtggtctcaaatttccacaatgcaatatcaatggtaattcctctttcacgctcagccttaagct 168  Q
    ||||| || ||||||||||  |||||  |||||||||| |||||||| || ||||  | ||| ||||| || || |||||||||||||||||||| ||||    
T  16232567 tgtccgggggcatcaatgagggtgcaacagtacttggttgtctcaaacttgcacatggaaatgtcaattgtgatacctctttcacgctcagccttgagct 16232666  T
Q  169 tgtcaaggacccatgcgtacttgaatga 196  Q
    ||||||| ||||| || |||||||||||    
T  16232667 tgtcaagcacccaagcatacttgaatga 16232694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 19 - 193
Target Start/End: Original strand, 16349482 - 16349656
Alignment:
Q  19 cacaatcagcctgggaggttccagtaatcatgttcttgatgaaatcacgatgtccaggagcatcaatgactgtgcagtagtacttggtggtctcaaattt 118  Q
    |||||||||| ||||| || ||||||||||||||||| |||||||| |  ||||| || ||||||||||  ||||||  ||||||||| |||||||| ||    
T  16349482 cacaatcagcttgggatgtcccagtaatcatgttcttaatgaaatccctgtgtccgggggcatcaatgatagtgcagcggtacttggttgtctcaaaatt 16349581  T
Q  119 ccacaatgcaatatcaatggtaattcctctttcacgctcagccttaagcttgtcaaggacccatgcgtacttgaa 193  Q
    | |||  | | | ||||| || || |||||||| ||||||||||| || |||||||| ||||| || ||||||||    
T  16349582 caacatagaattgtcaattgtgatacctctttcgcgctcagccttgagtttgtcaagaacccacgcatacttgaa 16349656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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