View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6875A_low_279 (Length: 224)
Name: NF6875A_low_279
Description: NF6875A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6875A_low_279 |
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| [»] chr3 (1 HSPs) |
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| [»] scaffold0334 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 156; Significance: 5e-83; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 37704626 - 37704781
Alignment:
| Q |
1 |
gaccagactttttgaacgtaattagcacgaaagttggaatcttatttcaagttgtgataagataacaaattcatttaagtagcaatcacagtgagtaatg |
100 |
Q |
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| T |
37704626 |
gaccagactttttgaacgtaattagcacgaaagttggaatcttatttcaagttgtgataagataacaaattcatttaagtagcaatcacagtgagtaatg |
37704725 |
T |
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| Q |
101 |
tgcttaaaaatacacctgaaatgaagaaaataacattaattgtatttagaatcgga |
156 |
Q |
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| T |
37704726 |
tgcttaaaaatacacctgaaatgaagaaaataacattaattgtatttagaatcgga |
37704781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 5 - 133
Target Start/End: Original strand, 37699152 - 37699283
Alignment:
| Q |
5 |
agactttttgaacgtaattagcacgaaagttggaatcttatttcaagttgtgataa---gataacaaattcatttaagtagcaatcacagtgagtaatgt |
101 |
Q |
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| T |
37699152 |
agacttttcgaacgtaattagcactaaagttggaatcttattgcaagttgtgataataagataacaaattcatttaagtagcaatcagaatgagtaattt |
37699251 |
T |
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| Q |
102 |
gcttaaaaatacacctgaaatgaagaaaataa |
133 |
Q |
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| T |
37699252 |
gcttaaaaatacacctaaaatgaagaaaataa |
37699283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 5 - 133
Target Start/End: Original strand, 37437696 - 37437823
Alignment:
| Q |
5 |
agactttttgaacgtaattagcacgaaagttggaatcttatttcaagttgtgataa---gataacaaattcatttaagtagcaatcacagtgagtaatgt |
101 |
Q |
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| T |
37437696 |
agacttttcgaacgtaattagca----agttggaatcttattgcaagttgtgataataagataacaaattcatttaagtagcaatcagaatgagtaattt |
37437791 |
T |
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| Q |
102 |
gcttaaaaatacacctgaaatgaagaaaataa |
133 |
Q |
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| T |
37437792 |
gcttaaaaatacacctgaaatgaagaaaataa |
37437823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 37698806 - 37698864
Alignment:
| Q |
19 |
taattagcacgaaagttggaatcttatttcaagttgtgataagataacaaattcattta |
77 |
Q |
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| T |
37698806 |
taattagcactaaagttggaatcttattgcaagttgtgataagataacaaattcattta |
37698864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 157 - 224
Target Start/End: Original strand, 11177429 - 11177496
Alignment:
| Q |
157 |
acgtagcagcagctttgaaaataaagggaatttggattggtaagtgctgcaaaataaaatcgggttga |
224 |
Q |
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| T |
11177429 |
acgtagcagcagctttgaaaataaagggaatttggattggtaagtgctgcaaaataaaatcgggttga |
11177496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 5 - 133
Target Start/End: Complemental strand, 16841060 - 16840923
Alignment:
| Q |
5 |
agactttttgaacgtaattagcacgaaagttggaatcttatttcaagttgtgata------agataacaaattcatttaagtagcaatcacagtgagtaa |
98 |
Q |
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| T |
16841060 |
agactttttgaacgtaattagcactaa-gttggaatcttattgcaagttgtgatattaataagataacaaattcatttaagtaccaatcacaatgaataa |
16840962 |
T |
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| Q |
99 |
tgtgcttaaaa----atacacctgaaatgaagaaaataa |
133 |
Q |
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| T |
16840961 |
tttgcttaaaaatatatacacctgaaatgaagaaaataa |
16840923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0334 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0334
Description:
Target: scaffold0334; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 157 - 224
Target Start/End: Complemental strand, 16537 - 16470
Alignment:
| Q |
157 |
acgtagcagcagctttgaaaataaagggaatttggattggtaagtgctgcaaaataaaatcgggttga |
224 |
Q |
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| T |
16537 |
acgtagcagcaactttgaaaataaagggaatttggattggtaagtgctgcaaaataaaatcgggttga |
16470 |
T |
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