View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6875A_low_28 (Length: 412)
Name: NF6875A_low_28
Description: NF6875A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6875A_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 14 - 393
Target Start/End: Original strand, 44821510 - 44821890
Alignment:
| Q |
14 |
tggacatcatcctctactttgacaatataattcccagcaccatataaaatgtaaccgattaatagaaaaatcacaaagaataggattgcaatagaaagtg |
113 |
Q |
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|||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||| |
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| T |
44821510 |
tggaaatcatcctctactttgacaatatgattcccagcaccatataaaatgtaaccgattaaaagaagaatcacaaagaataggattgcagtagaaagtg |
44821609 |
T |
|
| Q |
114 |
ctgtccaatttggcggtgccttctggtgatacctgtacaaaagtttgatcataagcatctttctgctgacaaaatgccgaaa-tcagttccagaaaatgt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
44821610 |
ctgtccaatttggcggtgccttctggtgatacctgtacaaaagtttgatcataagcatctttctgctgacaaaatgccgaaagtcagttccagaaaatgt |
44821709 |
T |
|
| Q |
213 |
aatgtacagtagccagaagaacctacctacatatcatttgatgtttcctgtatggatctccaaattcaagcttactttcatggacaagagaaacatcacc |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
44821710 |
aatgtacagtagccagaagaacctacctacatatcatttgatgtttcctgtatggatctccaaaatcaagcttactttcatggacaagagaaacatcacc |
44821809 |
T |
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| Q |
313 |
ttcttcgtattggttgccatacatgattaggggatcagtagaattcgtgacatcgtatacattgaccaaaattgcttgatg |
393 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||| |
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| T |
44821810 |
ttcttcgtattggttgccatacatgattaggggatcagaagagttcgtgacatcatatacattgaccaaaattgcttgatg |
44821890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 14 - 375
Target Start/End: Complemental strand, 28130095 - 28129733
Alignment:
| Q |
14 |
tggacatcatcctctactttgacaatataattcccagcaccatataaaatgtaaccgattaatagaaaaatcacaaagaataggattgcaatagaaagtg |
113 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |
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| T |
28130095 |
tggaaatcatcctctactttgacaatataattcccagcaccatataaaatgtaaccgattaatagaagaatcacaaagaataggattgcagtagaaagtg |
28129996 |
T |
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| Q |
114 |
ctgtccaatttggcggtgccttctggtgatacctgtacaaaagtttgatcataagcatctttctgctgacaaaatgccgaaa-tcagttccagaaaatgt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
28129995 |
ctgtccaatttggcggtgccttctggtgatacctgtacaaaagtttgatcataagcatctttctgctgacaaaatgccgaaagtcagttccagaaaatgt |
28129896 |
T |
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| Q |
213 |
aatgtacagtagccagaagaacctacctacatatcatttgatgtttcctgtatggatctccaaattcaagcttactttcatggacaagagaaacatcacc |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
28129895 |
aatgtacagtagccagaagaacctacctacatatcatttgatgtttcctgtatggatctccaaaatcaagcttactttcatggacaagagaaacatcacc |
28129796 |
T |
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| Q |
313 |
ttcttcgtattggttgccatacatgattaggggatcagtagaattcgtgacatcgtatacatt |
375 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
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| T |
28129795 |
ttcttcgtattggttgccatacatgattaggggatcagtagagttcgtgacatcatatacatt |
28129733 |
T |
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