View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6875A_low_280 (Length: 224)
Name: NF6875A_low_280
Description: NF6875A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6875A_low_280 |
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| [»] chr1 (4 HSPs) |
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| [»] scaffold0432 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 9805109 - 9805332
Alignment:
| Q |
1 |
tcttcctgctcatcactggtgcttttcattttgttcaacaagaattccttttccctttgatgcatttatgtgtacaaaaatttaagataaaatgtgtact |
100 |
Q |
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| T |
9805109 |
tcttcctcctcatcaccagtgcttttcattttgttcaacaagaattccttttccctttgatgcattcctatgtacaaaaatttaatataaaatgtgtact |
9805208 |
T |
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| Q |
101 |
agaagtaaatagcaaataacaaatacaagtacatattttaataaccgaataaaacaaaaatcacaatataccttgattctcccttttcgcgagtacatga |
200 |
Q |
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| T |
9805209 |
agaagtaaatagaaaataacaaatacaagtacatattttaataaccgaataaaaaaaaaatcacaatataccttgattctcccttttcgcgagtacatga |
9805308 |
T |
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| Q |
201 |
aataccttccatcttatcctgttc |
224 |
Q |
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| T |
9805309 |
aataccttccatcttgtcctgttc |
9805332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 9818036 - 9818211
Alignment:
| Q |
1 |
tcttcctgctcatcactggtgcttttcattttgttcaacaagaattccttttccctttgatgcatttatgtgtacaaaaatttaagataaaatgtgtact |
100 |
Q |
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| T |
9818036 |
tcttcctcctcatcactagtgcttttcattttgttcaacaagaattccttttccctttgatgcattcttgtgtacaaaaatttaatataaattgtgtact |
9818135 |
T |
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| Q |
101 |
agaagtaaatagcaaataacaaatacaagtacatattttaataaccgaataaaacaa--aaatcacaatatacctt |
174 |
Q |
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| T |
9818136 |
agaagtaaatagaaaataacaaatacaagtacataatttaataaccgtataaaaaaaataaatcacaatatacctt |
9818211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 69 - 224
Target Start/End: Complemental strand, 9806621 - 9806464
Alignment:
| Q |
69 |
tgtgtacaaaaatttaagataaaatgtgtactagaagtaaatagcaaataacaaatacaagtacatattttaataaccgaataaaacaaa--aatcacaa |
166 |
Q |
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| T |
9806621 |
tgtgtacaaaaattaaatataaaatgtgtattagaaacaaatagaaaataacaaacacaagtacatatttgaataaccaactaaaataaataaatcacaa |
9806522 |
T |
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| Q |
167 |
tataccttgattctcccttttcgcgagtacatgaaataccttccatcttatcctgttc |
224 |
Q |
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| T |
9806521 |
tataccttgattctcccttttcgtgagcacgtgaaataccttccatcttgtcttgttc |
9806464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 57
Target Start/End: Complemental strand, 9806653 - 9806621
Alignment:
| Q |
25 |
ttcattttgttcaacaagaattccttttccctt |
57 |
Q |
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| T |
9806653 |
ttcattttgttcaacaataattccttttccctt |
9806621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0432 (Bit Score: 87; Significance: 7e-42; HSPs: 1)
Name: scaffold0432
Description:
Target: scaffold0432; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 22 - 215
Target Start/End: Original strand, 12071 - 12264
Alignment:
| Q |
22 |
cttttcattttgttcaacaagaattccttttccctttgatgcatttatgtgtacaaaaatttaagataaaatgtgtactagaagtaaatagcaaataaca |
121 |
Q |
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| T |
12071 |
cttttcattttgttcaacaagaattccttctcccttcgctgcattatcgtgtaccaaaatttaatataaaatg-gtactagaagtaaatataaaataaca |
12169 |
T |
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| Q |
122 |
aatacaagtacatattttaataaccgaataaaacaa-aaatcacaatataccttgattctcccttttcgcgagtacatgaaataccttccatctt |
215 |
Q |
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| T |
12170 |
aacataagtacataattgaataaccaactaaaaaaataaatcacaaaatacgttgattcccccttttcatgagtacatggaataccttccatctt |
12264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 117 - 208
Target Start/End: Original strand, 2371052 - 2371144
Alignment:
| Q |
117 |
taacaaatacaagtacatattttaataaccgaataaaacaa-aaatcacaatataccttgattctcccttttcgcgagtacatgaaatacctt |
208 |
Q |
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| T |
2371052 |
taacaaacataagtatatatttgaataatcgactaaaaaaataaatcacaatataccttgattctcctttttcacgagtacatggaatacctt |
2371144 |
T |
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