View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6875A_low_282 (Length: 224)
Name: NF6875A_low_282
Description: NF6875A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6875A_low_282 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 17 - 189
Target Start/End: Original strand, 21056583 - 21056755
Alignment:
| Q |
17 |
atgaagatctcgaaggtgaatatgaatcatacaattttatacattatgcaacatgcacctgaattttatacagtatacatttcttgatatttaggcgttg |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
21056583 |
atgaagatctcgaaggtgaatatgaatcatacaattttatacattatgcaacatgcacctgaattttatacagtatacatttcttgatatttaagcattg |
21056682 |
T |
|
| Q |
117 |
tttaatttacattaaatcgcttgagaaaaatgcttctcttgcacctgtattttgatttactcgacatcatttc |
189 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
21056683 |
tttaatttacattaaatcgcttgagaaaaatgcttctcttgcacctgtattttgatttactcgacatcgtttc |
21056755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 92 - 189
Target Start/End: Complemental strand, 26365350 - 26365252
Alignment:
| Q |
92 |
tacatttcttgatatttaggcgttgtttaatttacattaaatcgcttgagaaaaatgcttctcttg--cacctgtattttgatttactcgacatcatttc |
189 |
Q |
| |
|
|||||||||||||||||||| |||| |||||| ||||| ||||| |||||||| |||||||| ||| |||||||||||||||||||| ||| ||||||| |
|
|
| T |
26365350 |
tacatttcttgatatttaggtgttgattaattcacattgaatcgtttgagaaacatgcttct-ttgcacacctgtattttgatttacttgacgtcatttc |
26365252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University