View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6875A_low_287 (Length: 222)
Name: NF6875A_low_287
Description: NF6875A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6875A_low_287 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 18164180 - 18164401
Alignment:
| Q |
1 |
gtagttttgtattgtttctttcattcctttgggtgtgcattcattatgatctgcatctagtataagcatgaaaagaaattttcaaaattattgcatagta |
100 |
Q |
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| T |
18164180 |
gtagttttgtattgtttctttcattcctttgggtgtgcattcattatgatctgcatctagtataagcatgaaaagaaattttcaaaattattgcatagta |
18164279 |
T |
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| Q |
101 |
aaaggagattagcaacatctccaatgagattttatgtaatctgtgtgtatctgaatactataaattctagttttatatctaaactattaactcaaagttt |
200 |
Q |
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| T |
18164280 |
aaaggagattagcaacatctccaatgagattttatgtaatctgtgtgtatctgaatactataaattctagttttatatctaaactattaactcaaagttt |
18164379 |
T |
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| Q |
201 |
cattgtcgccggaaagaaaaaa |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
18164380 |
cattgtcgccggaaagaaaaaa |
18164401 |
T |
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