View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6875A_low_29 (Length: 412)
Name: NF6875A_low_29
Description: NF6875A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6875A_low_29 |
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| [»] scaffold0057 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 24 - 403
Target Start/End: Original strand, 46844530 - 46844907
Alignment:
| Q |
24 |
ccgtgtctgtcttattacatcaaaggaaagtatgatttgctaatttgtgtccgattagaattagaacgattccttgaaggaatgatagtgaataccatga |
123 |
Q |
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| T |
46844530 |
ccgtgtctgtcttattacatcaaaggaaagtataatttgctaatttgtgtccgattagaattagaccgattccttgaaggaatgatagtgaataccatga |
46844629 |
T |
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| Q |
124 |
gatcttgaacctagttgcattattgcattgcaggggtgagatggcattttgcagccatgaatgccgtgaccagaggatgttgttggaggacgtgatgcct |
223 |
Q |
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| T |
46844630 |
gatcttgaacctagttgcattattgcattgcaggggtgagatggcattttgcagccatgaatgccgtgaccagaggatgttgttggaggacgtgatgcct |
46844729 |
T |
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| Q |
224 |
atataacacaaaagatgcctaaattggaagctaacgatgattgagtatgtgacataattccacctaaacaaaaacaagttgacctttgcttcaatggact |
323 |
Q |
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| T |
46844730 |
atatagcac--aagatgcctaaattggaagctaaggatgattgagtatgtgacataattccacctaaacaaaaacaatttgacctttgcttcaatggact |
46844827 |
T |
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| Q |
324 |
tagaatatgaaataatcctcagaaatcttatatcaaagtgcttgattttgatctctctgcttctcaactcaacctctcta |
403 |
Q |
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| T |
46844828 |
tagaatatgaaataatcctcagaaatcttatatcaaagtgcttgattttgatctctctgcttctcaactcgacctctcta |
46844907 |
T |
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Target: scaffold0057 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0057
Description:
Target: scaffold0057; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 156 - 213
Target Start/End: Complemental strand, 48986 - 48929
Alignment:
| Q |
156 |
ggggtgagatggcattttgcagccatgaatgccgtgaccagaggatgttgttggagga |
213 |
Q |
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| T |
48986 |
ggggtgagatggcattttgcaaccctgaatgccgtaaccagaggaaactgttggagga |
48929 |
T |
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