View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6875A_low_291 (Length: 221)
Name: NF6875A_low_291
Description: NF6875A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6875A_low_291 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 18164180 - 18163960
Alignment:
| Q |
1 |
cataataatcaaacttgttgctagctctggttgttttgcttcattttcacatgcattgtatcactgctaacctaaatgaaaaattggaataaaatactcg |
100 |
Q |
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| T |
18164180 |
cataataatcaaacttgttgctagctctggttgttttgcttcattttcacatgcattgtatcactgctaacctaaatgaaaaattggaataaaatactcg |
18164081 |
T |
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| Q |
101 |
gttcacttgtgagtggttaagttcagatcgtctatgaatggtgaaaaagtggataattagagaggtgactcatacacctaatgtattaagattttgggtg |
200 |
Q |
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| T |
18164080 |
gttcacgtgtgagtggttaagttcacatcgtctatgaatggtgaaaaagtggataattagagaggtgactcatacacctaatgtattaagattttgggtg |
18163981 |
T |
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| Q |
201 |
gatatgtggcgtctctacctc |
221 |
Q |
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| T |
18163980 |
gagatgtggcgtctctacctc |
18163960 |
T |
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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 215
Target Start/End: Original strand, 11199982 - 11200038
Alignment:
| Q |
159 |
agagaggtgactcatacacctaatgtattaagattttgggtggatatgtggcgtctc |
215 |
Q |
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| T |
11199982 |
agagaggtgactcatatgcctaatgccttaaggttttgggtggagatgtggcgtctc |
11200038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 215
Target Start/End: Complemental strand, 28296126 - 28296070
Alignment:
| Q |
159 |
agagaggtgactcatacacctaatgtattaagattttgggtggatatgtggcgtctc |
215 |
Q |
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| T |
28296126 |
agagaggtgacccatatacctaatctcttaaggttttgggtggagatgtggtgtctc |
28296070 |
T |
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