View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6875A_low_295 (Length: 217)
Name: NF6875A_low_295
Description: NF6875A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6875A_low_295 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 146; Significance: 4e-77; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 19 - 205
Target Start/End: Complemental strand, 31998088 - 31997902
Alignment:
| Q |
19 |
aaataggtcaaaagactttgattnnnnnnnttaaaatccaattcttatgcagagccagaaagataaacaaaccaactgttaccatgaaatttagcagcta |
118 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
31998088 |
aaataggtcaaaagacttcgattaaaaaaattaaaatccaattcttatgcagagccagaaagataaacaaaccaactgtgaccaagaaatttagcagcta |
31997989 |
T |
|
| Q |
119 |
atatacttccttccagaggcacatttttccctccagaaagaccacctcctattatgcaagtccacatccacgaggcatattcttgga |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
31997988 |
atatacttccttccagaggcacatttttccctccagaaagaccacctcctattatgcaagtccacgtccacgaggcattttcttgga |
31997902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 205
Target Start/End: Complemental strand, 31996644 - 31996612
Alignment:
| Q |
173 |
tgcaagtccacatccacgaggcatattcttgga |
205 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |
|
|
| T |
31996644 |
tgcaagtccacatccacgaggcattttcttgga |
31996612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 111 - 202
Target Start/End: Complemental strand, 15843120 - 15843029
Alignment:
| Q |
111 |
agcagctaatatacttccttccagaggcacatttttccctccagaaagaccacctcctattatgcaagtccacatccacgaggcatattctt |
202 |
Q |
| |
|
||||| |||| ||||||| |||||||||||||| ||||||| ||||||| |||||| ||||||||||||||||||||||| || ||||| |
|
|
| T |
15843120 |
agcaggtaatgtacttccctccagaggcacattgccccctccaacaagaccatctcctactatgcaagtccacatccacgaggtattttctt |
15843029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University