View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6875A_low_297 (Length: 215)

Name: NF6875A_low_297

Description: NF6875A

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF6875A_low_297

[»] chr3 (5 HSPs)

Alignment Details

Target: chr3 (Bit Score: 173; Significance: 3e-93; HSPs: 5)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 173; E-Value: 3e-93

Query Start/End: Original strand, 22 - 215

Target Start/End: Complemental strand, 6939051 - 6938856

Alignment:

Q	22	gtaacatagaaccattctacaaggcatcactctaatttatgcagtaggaatgatgagacagcagactttgatggaaacggacagctgaatgaaggaaacc	121	Q
		\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	6939051	gtaacacagaaccattctggaaggcatcactctaatttatgcagtaggaatgatgagacagcagactttgatggaaacggacagctgaatgaaggaaacc	6938952	T

Q	122	gagtatcaggac--agtttgtttcagtcagagaatatcattgtcgagaggtgtgcattttgtgatgtcaggactcaggcagctacttcaacttctt	215	Q
		\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	6938951	gagtatcaggacaaagtttgtttcagtcagagaatatcattgtcgagaggtgtgcattttgtgatgtcaggactcaggcagctacttcaacttctt	6938856	T

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Target: chr3; HSP #2

Raw Score: 139; E-Value: 6e-73

Query Start/End: Original strand, 22 - 209

Target Start/End: Original strand, 6549841 - 6550030

Alignment:

Q	22	gtaacatagaaccattctacaaggcatcactctaatttatgcagtaggaatgatgagacagcagactttgatggaaacggacagctgaatgaaggaaacc	121	Q
		\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	6549841	gtaacacagaaccattctgcaaggcactactccaatttatgcattaggaatgatgagacagcagactttgatggaaacggacagctgaatgaaggaaacc	6549940	T

Q	122	gagtatcaggac--agtttgtttcagtcagagaatatcattgtcgagaggtgtgcattttgtgatgtcaggactcaggcagctacttcaa	209	Q
		\|\|\| \| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|
T	6549941	gagcagcaggacaaagtttgtttcagtcagagaatatcattgtcgagaggtgtgcattttgtgatgtcaggactcaggcatccacttcaa	6550030	T

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Target: chr3; HSP #3

Raw Score: 42; E-Value: 0.000000000000005

Query Start/End: Original strand, 22 - 103

Target Start/End: Original strand, 6796619 - 6796700

Alignment:

Q	22	gtaacatagaaccattctacaaggcatcactctaatttatgcagtaggaatgatgagacagcagactttgatggaaacggac	103	Q
		\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|
T	6796619	gtaacacagaaccattctccaaggcgctactccaatttatgcattaggaatgatgatacagcagactttgacggaaatggac	6796700	T

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Target: chr3; HSP #4

Raw Score: 31; E-Value: 0.00000002

Query Start/End: Original strand, 29 - 83

Target Start/End: Complemental strand, 6764052 - 6763998

Alignment:

Q	29	agaaccattctacaaggcatcactctaatttatgcagtaggaatgatgagacagc	83	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|
T	6764052	agaaccattctacaagacactactccaatttatgcattaggaatgatgagtcagc	6763998	T

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Target: chr3; HSP #5

Raw Score: 30; E-Value: 0.00000007

Query Start/End: Original strand, 142 - 187

Target Start/End: Original strand, 6796775 - 6796820

Alignment:

Q	142	tcagtcagagaatatcattgtcgagaggtgtgcattttgtgatgtc	187	Q
		\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	6796775	tcagacagagaaaatcattgtggagaggcgtgcattttgtgatgtc	6796820	T

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