View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6875A_low_3 (Length: 524)
Name: NF6875A_low_3
Description: NF6875A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6875A_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 452; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 12 - 518
Target Start/End: Complemental strand, 43239342 - 43238834
Alignment:
| Q |
12 |
atgaaaagctgccaagagccaattagcataagctgtgtagagtccaataacaaagagcaatatgataccccatgtccaacctaatggaaccattatcagg |
111 |
Q |
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| T |
43239342 |
atgaaaagctgccaagagccaattagcataagctgtgtagagtccaataacaaagagcaatatgataccccatgtccaacctaatggaaccattatcagg |
43239243 |
T |
|
| Q |
112 |
ttagagaaactgaatatccaaccacagttgaagcctgtcaccaacatcaaccccacttgttgccatgaatctgcaaattgaatgaaacactcattaatga |
211 |
Q |
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| T |
43239242 |
ttagagaaactgaatatccaaccacagttgaagcctgtcaccaacatcaaccccacttgttgccatgaatctgcaaattgaatgaaacacccattaatga |
43239143 |
T |
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| Q |
212 |
tgttaacaattactaacaaaacagcatagaaaaatgaatgaatcatgtataagacaatagtttacatgnnnnnnntaaaagaaacataagagttaaaaca |
311 |
Q |
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| T |
43239142 |
tgttaacaattactaacaaaacagcatagaaaaatgtatgaatcatgtataagacaatagtttacatgaaaaaaataaaagaaacataaaagttaaaaca |
43239043 |
T |
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| Q |
312 |
taatttaactgagaat-agagtaatatacctttgtcaatagtatgagcagtggaaagatcataagaatcatttgagatattcttgtcttcttgaccatgt |
410 |
Q |
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||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
43239042 |
taatttagctgagaataagagtaatatacctttgtcaatagtatgagcagtggaaaggtcataagaatcatttgagatattcttgtcttcttgaccatgt |
43238943 |
T |
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| Q |
411 |
tctaggttgagagtgagagagttatcattgcttgctctaccttcaacctccatggtgaatatgttaactcattccaatttccaaaaacgcaaga-tttgg |
509 |
Q |
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| T |
43238942 |
tctaggttgagagtgagagagttatcattgcttgctctaccttcaacctccatggtgaatatgttaactcattccaatttccaaaaacgcaagagtttgg |
43238843 |
T |
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| Q |
510 |
tacacatat |
518 |
Q |
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| T |
43238842 |
tacacatat |
43238834 |
T |
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