View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6875A_low_301 (Length: 214)

Name: NF6875A_low_301
Description: NF6875A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6875A_low_301
NF6875A_low_301
[»] chr5 (3 HSPs)
chr5 (21-196)||(42784416-42784592)
chr5 (55-165)||(5520554-5520662)
chr5 (57-164)||(15597591-15597698)
[»] chr8 (3 HSPs)
chr8 (21-165)||(18981360-18981504)
chr8 (56-196)||(4707612-4707753)
chr8 (108-165)||(26918450-26918507)
[»] chr6 (9 HSPs)
chr6 (21-165)||(22012910-22013054)
chr6 (21-165)||(27526189-27526335)
chr6 (59-167)||(27650011-27650112)
chr6 (88-164)||(13142982-13143058)
chr6 (56-165)||(9821613-9821722)
chr6 (97-164)||(27683377-27683444)
chr6 (97-164)||(27690698-27690765)
chr6 (97-165)||(17354762-17354830)
chr6 (108-164)||(28039675-28039731)
[»] chr2 (11 HSPs)
chr2 (21-165)||(2587173-2587317)
chr2 (21-165)||(44323016-44323162)
chr2 (77-165)||(44314837-44314925)
chr2 (55-165)||(10414823-10414933)
chr2 (58-163)||(15001835-15001940)
chr2 (56-196)||(809803-809946)
chr2 (109-165)||(31713226-31713282)
chr2 (109-165)||(45330914-45330970)
chr2 (55-165)||(39155772-39155883)
chr2 (128-165)||(4405020-4405057)
chr2 (127-167)||(1775493-1775533)
[»] chr3 (5 HSPs)
chr3 (30-164)||(28059393-28059527)
chr3 (30-164)||(28069818-28069952)
chr3 (60-164)||(5706673-5706775)
chr3 (88-163)||(9437013-9437088)
chr3 (55-165)||(19433944-19434054)
[»] chr1 (7 HSPs)
chr1 (55-165)||(14649227-14649337)
chr1 (55-165)||(14659017-14659127)
chr1 (21-162)||(42565065-42565206)
chr1 (55-196)||(47051658-47051800)
chr1 (55-165)||(29290145-29290255)
chr1 (56-165)||(17654496-17654605)
chr1 (55-121)||(16099746-16099812)
[»] chr4 (4 HSPs)
chr4 (55-165)||(54352939-54353047)
chr4 (60-132)||(5359748-5359820)
chr4 (55-167)||(27562271-27562384)
chr4 (108-166)||(11513806-11513863)
[»] chr7 (5 HSPs)
chr7 (55-164)||(28802534-28802643)
chr7 (88-167)||(36265553-36265632)
chr7 (113-164)||(19670504-19670555)
chr7 (108-163)||(30943351-30943406)
chr7 (137-165)||(6023408-6023436)
[»] scaffold0713 (1 HSPs)
scaffold0713 (56-163)||(4060-4167)


Alignment Details
Target: chr5 (Bit Score: 125; Significance: 1e-64; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 21 - 196
Target Start/End: Complemental strand, 42784592 - 42784416
Alignment:
Q  21 tgaccttaaacatcaatttcaacgatnnnnnnnntgttcaaagggtgtgtttcccgttttgagaaacactttcacttataaaatcaccaaaatatcaata 120  Q
    ||||||||||||||||||||||||||        ||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  42784592 tgaccttaaacatcaatttcaacgataagaaaaatgttcaaagggtgtgcttcccgttttgagaaatactttaacttataaaatcaccaaaatatcaata 42784493  T
Q  121 atagcgataattaaaataagtgataatgatcgtcatcaactcaca-acatgacgaaagaactcaattcttagtgatg 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||    
T  42784492 atagcgataattaaaataagtgataatgatcgtcatcaactcacagatatgacgaaagaactcaattcctagtgatg 42784416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 55 - 165
Target Start/End: Original strand, 5520554 - 5520662
Alignment:
Q  55 tgttcaaagggtgtgtttcccgttttgagaaacactttcacttataaaatcaccaaaatatcaataatagcgataattaaaataagtgataatgatcgtc 154  Q
    ||||||||||||||  | ||| |||| | ||||||||| || || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  5520554 tgttcaaagggtgt--tccccatttttataaacactttaacatacaaaatcaccaaaatatcaataatagctataattaaaataagtgataatgatcgtc 5520651  T
Q  155 atcaactcaca 165  Q
    |||||||||||    
T  5520652 atcaactcaca 5520662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 57 - 164
Target Start/End: Complemental strand, 15597698 - 15597591
Alignment:
Q  57 ttcaaagggtgtgtttcccgttttgagaaacactttcacttataaaatcaccaaaatatcaataatagcgataattaaaataagtgataatgatcgtcat 156  Q
    ||||||||||||||| ||| |||| | ||| ||||| || ||||||||||  ||||||| |||||||  |||||| ||||||||||||||||||||||||    
T  15597698 ttcaaagggtgtgttccccatttttataaatactttaacatataaaatcataaaaatattaataataaagataatgaaaataagtgataatgatcgtcat 15597599  T
Q  157 caactcac 164  Q
    ||||||||    
T  15597598 caactcac 15597591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 105; Significance: 1e-52; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 21 - 165
Target Start/End: Complemental strand, 18981504 - 18981360
Alignment:
Q  21 tgaccttaaacatcaatttcaacgatnnnnnnnntgttcaaagggtgtgtttcccgttttgagaaacactttcacttataaaatcaccaaaatatcaata 120  Q
    ||||||||||||||||||||||||||        ||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  18981504 tgaccttaaacatcaatttcaacgatgagaaaaatgttcaaagggtgtgcttcccgttttgagaaatactttaacttataaaatcaccaaaatatcaata 18981405  T
Q  121 atagcgataattaaaataagtgataatgatcgtcatcaactcaca 165  Q
    ||||||||||||||||||||||||||||||| |||||||||||||    
T  18981404 atagcgataattaaaataagtgataatgatcatcatcaactcaca 18981360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 56 - 196
Target Start/End: Original strand, 4707612 - 4707753
Alignment:
Q  56 gttcaaagggtgtgtttcccgttttgagaaacactttcacttataaaatcaccaaaatatcaataatagcgataattaaaataagtgataatgatcgtca 155  Q
    |||||||||||||||| ||| |||| | ||||||||| || || ||||| | |||| |||||||||||   |||   |||||| | |||||||||||| |    
T  4707612 gttcaaagggtgtgttccccatttttataaacactttaacatagaaaattatcaaagtatcaataatattaatagggaaaatatgcgataatgatcgtta 4707711  T
Q  156 tcaactcaca-acatgacgaaagaactcaattcttagtgatg 196  Q
    |||||||||| | |||||||||||||||||||| ||||||||    
T  4707712 tcaactcacagatatgacgaaagaactcaattcctagtgatg 4707753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 108 - 165
Target Start/End: Original strand, 26918450 - 26918507
Alignment:
Q  108 caaaatatcaataatagcgataattaaaataagtgataatgatcgtcatcaactcaca 165  Q
    ||||||||||||||||  |||||||||||||| |||||||||||||||||||||||||    
T  26918450 caaaatatcaataataatgataattaaaataattgataatgatcgtcatcaactcaca 26918507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 105; Significance: 1e-52; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 21 - 165
Target Start/End: Complemental strand, 22013054 - 22012910
Alignment:
Q  21 tgaccttaaacatcaatttcaacgatnnnnnnnntgttcaaagggtgtgtttcccgttttgagaaacactttcacttataaaatcaccaaaatatcaata 120  Q
    ||||||||||||||||||||||||||        ||||||||||||||| |||||||||||||||| ||||| |||||||||||||| ||||||||||||    
T  22013054 tgaccttaaacatcaatttcaacgataagaaaaatgttcaaagggtgtgcttcccgttttgagaaatactttaacttataaaatcacaaaaatatcaata 22012955  T
Q  121 atagcgataattaaaataagtgataatgatcgtcatcaactcaca 165  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  22012954 atagcgataattaaaataagtgataatgatcgtcatcaactcaca 22012910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 21 - 165
Target Start/End: Complemental strand, 27526335 - 27526189
Alignment:
Q  21 tgaccttaaacatcaatttcaacgatnnnnnnnn--tgttcaaagggtgtgtttcccgttttgagaaacactttcacttataaaatcaccaaaatatcaa 118  Q
    ||||||||||||||||||||||||||          |||| ||| |||||| |||||||||||||||| ||||| ||||||||||| |||||||||||||    
T  27526335 tgaccttaaacatcaatttcaacgataaaaaaaaaatgtttaaaaggtgtgcttcccgttttgagaaatactttaacttataaaattaccaaaatatcaa 27526236  T
Q  119 taatagcgataattaaaataagtgataatgatcgtcatcaactcaca 165  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  27526235 taatagcgataattaaaataagtgataatgatcgtcatcaactcaca 27526189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 59 - 167
Target Start/End: Complemental strand, 27650112 - 27650011
Alignment:
Q  59 caaagggtgtgtttcccgttttgagaaacactttcacttataaaatcaccaaaatatcaataatagcgataattaaaataagtgataatgatcgtcatca 158  Q
    ||||||||||| ||||| |||||  ||| ||||| ||||||||||| |||||||||||||||||| ||||||||||||||||       |||||||||||    
T  27650112 caaagggtgtgcttcccattttggtaaatactttaacttataaaattaccaaaatatcaataataacgataattaaaataag-------gatcgtcatca 27650020  T
Q  159 actcacaac 167  Q
    |||||||||    
T  27650019 actcacaac 27650011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 88 - 164
Target Start/End: Original strand, 13142982 - 13143058
Alignment:
Q  88 actttcacttataaaatcaccaaaatatcaataatagcgataattaaaataagtgataatgatcgtcatcaactcac 164  Q
    ||||| || ||||||||||  ||||||||||||||| ||||| | |||||||| |||||||||||||||||||||||    
T  13142982 actttaacatataaaatcataaaaatatcaataataacgatattgaaaataagcgataatgatcgtcatcaactcac 13143058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 56 - 165
Target Start/End: Complemental strand, 9821722 - 9821613
Alignment:
Q  56 gttcaaagggtgtgtttcccgttttgagaaacactttcacttataaaatcaccaaaatatcaataatagcgataattaaaataagtgataatgatcgtca 155  Q
    |||||||||||||||| ||| |||| | ||||||||| || |||||||| | ||||||||||||||||   |||   |||||| | |||||||||||| |    
T  9821722 gttcaaagggtgtgttccccatttttataaacactttaacatataaaattatcaaaatatcaataatattaatagggaaaatatgcgataatgatcgtta 9821623  T
Q  156 tcaactcaca 165  Q
    ||||||||||    
T  9821622 tcaactcaca 9821613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 97 - 164
Target Start/End: Complemental strand, 27683444 - 27683377
Alignment:
Q  97 tataaaatcaccaaaatatcaataatagcgataattaaaataagtgataatgatcgtcatcaactcac 164  Q
    ||||||||||  ||||||||||||||| ||||| | ||||||||  ||||||||||||||||||||||    
T  27683444 tataaaatcataaaaatatcaataataacgatattgaaaataagcaataatgatcgtcatcaactcac 27683377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 97 - 164
Target Start/End: Complemental strand, 27690765 - 27690698
Alignment:
Q  97 tataaaatcaccaaaatatcaataatagcgataattaaaataagtgataatgatcgtcatcaactcac 164  Q
    ||||||||||  ||||||||||||||| ||||| | ||||||||  ||||||||||||||||||||||    
T  27690765 tataaaatcataaaaatatcaataataacgatattgaaaataagcaataatgatcgtcatcaactcac 27690698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 97 - 165
Target Start/End: Complemental strand, 17354830 - 17354762
Alignment:
Q  97 tataaaatcaccaaaatatcaataatagcgataattaaaataagtgataatgatcgtcatcaactcaca 165  Q
    ||||||||||  ||||||||||||||| ||||| | ||||||||  ||||||||||| |||||||||||    
T  17354830 tataaaatcataaaaatatcaataataacgatattgaaaataagcaataatgatcgtaatcaactcaca 17354762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 164
Target Start/End: Complemental strand, 28039731 - 28039675
Alignment:
Q  108 caaaatatcaataatagcgataattaaaataagtgataatgatcgtcatcaactcac 164  Q
    ||||||||||||||||   ||| | |||||| |||||||||||||| ||||||||||    
T  28039731 caaaatatcaataatattaatagtaaaaatatgtgataatgatcgttatcaactcac 28039675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 101; Significance: 3e-50; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 21 - 165
Target Start/End: Complemental strand, 2587317 - 2587173
Alignment:
Q  21 tgaccttaaacatcaatttcaacgatnnnnnnnntgttcaaagggtgtgtttcccgttttgagaaacactttcacttataaaatcaccaaaatatcaata 120  Q
    ||||||||||||| ||||||||||||        ||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  2587317 tgaccttaaacattaatttcaacgataagaaaaatgttcaaagggtgtgcttcccgttttgagaaatactttaacttataaaatcaccaaaatatcaata 2587218  T
Q  121 atagcgataattaaaataagtgataatgatcgtcatcaactcaca 165  Q
    |||| ||||||||||||||||||||||||||||||||||||||||    
T  2587217 atagagataattaaaataagtgataatgatcgtcatcaactcaca 2587173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 21 - 165
Target Start/End: Complemental strand, 44323162 - 44323016
Alignment:
Q  21 tgaccttaaacatcaatttcaacgatnnnnnnnn--tgttcaaagggtgtgtttcccgttttgagaaacactttcacttataaaatcaccaaaatatcaa 118  Q
    ||||||||||||||||||||||||||          |||| ||| |||||| |||||||||||||||| ||||| |||||||||||||| ||||||||||    
T  44323162 tgaccttaaacatcaatttcaacgataaaaaaaaaatgtttaaaaggtgtgcttcccgttttgagaaatactttaacttataaaatcacaaaaatatcaa 44323063  T
Q  119 taatagcgataattaaaataagtgataatgatcgtcatcaactcaca 165  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  44323062 taatagcgataattaaaataagtgataatgatcgtcatcaactcaca 44323016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 77 - 165
Target Start/End: Complemental strand, 44314925 - 44314837
Alignment:
Q  77 ttttgagaaacactttcacttataaaatcaccaaaatatcaataatagcgataattaaaataagtgataatgatcgtcatcaactcaca 165  Q
    |||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44314925 ttttgagaaatactttaacttataaaatcacaaaaatatcaataatagcgataattaaaataagtgataatgatcgtcatcaactcaca 44314837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 55 - 165
Target Start/End: Complemental strand, 10414933 - 10414823
Alignment:
Q  55 tgttcaaagggtgtgtttcccgttttgagaaacactttcacttataaaatcaccaaaatatcaataatagcgataattaaaataagtgataatgatcgtc 154  Q
    |||||||| |||| ||| |||  ||||| ||| ||||| || ||||||||||  |||||| |||||||| ||||| | |||||||| |||||||||||||    
T  10414933 tgttcaaaaggtgcgttccccaatttgataaatactttaacatataaaatcataaaaatagcaataataacgatattgaaaataagcgataatgatcgtc 10414834  T
Q  155 atcaactcaca 165  Q
    |||||||||||    
T  10414833 atcaactcaca 10414823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 58 - 163
Target Start/End: Original strand, 15001835 - 15001940
Alignment:
Q  58 tcaaagggtgtgtttcccgttttgagaaacactttcacttataaaatcaccaaaatatcaataatagcgataattaaaataagtgataatgatcgtcatc 157  Q
    |||||||||||||| ||| |||| | ||||||||| || || ||||| | ||||||||||||||||   ||| | |||||| |||||||||||||| |||    
T  15001835 tcaaagggtgtgttccccatttttataaacactttaacatagaaaattatcaaaatatcaataatattaatagtgaaaatatgtgataatgatcgttatc 15001934  T
Q  158 aactca 163  Q
    ||||||    
T  15001935 aactca 15001940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 56 - 196
Target Start/End: Original strand, 809803 - 809946
Alignment:
Q  56 gttcaaagggtgtgtttcccgttttg--agaaacactttcacttataaaatcaccaaaatatcaataatagcgataattaaaataagtgataatgatcgt 153  Q
    |||||||||||||||| ||| ||||   | ||||||||| || || ||||| | ||||||||||||||||   |||   |||||| | ||||||||||||    
T  809803 gttcaaagggtgtgttccccatttttttataaacactttaacatagaaaattatcaaaatatcaataatattaatagggaaaatatgcgataatgatcgt 809902  T
Q  154 catcaactcaca-acatgacgaaagaactcaattcttagtgatg 196  Q
     ||||||||||| | |||||||||||||||||||| ||| ||||    
T  809903 tatcaactcacagatatgacgaaagaactcaattcctagggatg 809946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 109 - 165
Target Start/End: Complemental strand, 31713282 - 31713226
Alignment:
Q  109 aaaatatcaataatagcgataattaaaataagtgataatgatcgtcatcaactcaca 165  Q
    ||||||||||||||| ||||| | |||||||| |||||||||||||| |||||||||    
T  31713282 aaaatatcaataataacgatattgaaaataagcgataatgatcgtcaccaactcaca 31713226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 109 - 165
Target Start/End: Complemental strand, 45330970 - 45330914
Alignment:
Q  109 aaaatatcaataatagcgataattaaaataagtgataatgatcgtcatcaactcaca 165  Q
    |||||||||| |||||| ||||| ||||||| ||||||||||||||||||| |||||    
T  45330970 aaaatatcaacaatagcaataatcaaaataaatgataatgatcgtcatcaattcaca 45330914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 165
Target Start/End: Original strand, 39155772 - 39155883
Alignment:
Q  55 tgttcaaagggtgtgtttcccgttttg-agaaacactttcacttataaaatcaccaaaatatcaataatagcgataattaaaataagtgataatgatcgt 153  Q
    ||||||||||| ||||| ||| ||||  | ||||||||| || || ||||| | ||||||||||||||||   ||| | |||||| ||||||||||||||    
T  39155772 tgttcaaagggcgtgttccccattttttataaacactttaacatagaaaattatcaaaatatcaataatattaatagtgaaaatatgtgataatgatcgt 39155871  T
Q  154 catcaactcaca 165  Q
     |||||||||||    
T  39155872 tatcaactcaca 39155883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 128 - 165
Target Start/End: Complemental strand, 4405057 - 4405020
Alignment:
Q  128 taattaaaataagtgataatgatcgtcatcaactcaca 165  Q
    ||||||||||||| |||||||||||| |||||||||||    
T  4405057 taattaaaataagcgataatgatcgttatcaactcaca 4405020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 167
Target Start/End: Complemental strand, 1775533 - 1775493
Alignment:
Q  127 ataattaaaataagtgataatgatcgtcatcaactcacaac 167  Q
    |||||||||||| ||||||||||||||||| ||||| ||||    
T  1775533 ataattaaaatatgtgataatgatcgtcataaactcgcaac 1775493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 95; Significance: 1e-46; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 30 - 164
Target Start/End: Original strand, 28059393 - 28059527
Alignment:
Q  30 acatcaatttcaacgatnnnnnnnntgttcaaagggtgtgtttcccgttttgagaaacactttcacttataaaatcaccaaaatatcaataatagcgata 129  Q
    |||||||||||||||||        ||||||||||||||| |||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||    
T  28059393 acatcaatttcaacgataagaaaaatgttcaaagggtgtgcttcccgttttgagaaatactttaaattataaaatcaccaaaatatcaataatagcgata 28059492  T
Q  130 attaaaataagtgataatgatcgtcatcaactcac 164  Q
    |||||||||||||||||||||||||||||||||||    
T  28059493 attaaaataagtgataatgatcgtcatcaactcac 28059527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 30 - 164
Target Start/End: Original strand, 28069818 - 28069952
Alignment:
Q  30 acatcaatttcaacgatnnnnnnnntgttcaaagggtgtgtttcccgttttgagaaacactttcacttataaaatcaccaaaatatcaataatagcgata 129  Q
    |||||||||||||||||        ||||||||||||||| |||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||    
T  28069818 acatcaatttcaacgataagaaaaatgttcaaagggtgtgcttcccgttttgagaaatactttaaattataaaatcaccaaaatatcaataatagcgata 28069917  T
Q  130 attaaaataagtgataatgatcgtcatcaactcac 164  Q
    |||||||||||||||||||||||||||||||||||    
T  28069918 attaaaataagtgataatgatcgtcatcaactcac 28069952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 60 - 164
Target Start/End: Original strand, 5706673 - 5706775
Alignment:
Q  60 aaagggtgtgtttcccgttttg-agaaacactttcacttataaaatcaccaaaatatcaataatagcgataattaaaataagtgataatgatcgtcatca 158  Q
    |||||||||||| ||| ||||  | ||| ||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||   ||||||||||    
T  5706673 aaagggtgtgttccccattttttataaatactttaacttataaaataaccaaaatatcaataataacgataattaaaataagtgata---atcgtcatca 5706769  T
Q  159 actcac 164  Q
    ||||||    
T  5706770 actcac 5706775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 88 - 163
Target Start/End: Original strand, 9437013 - 9437088
Alignment:
Q  88 actttcacttataaaatcaccaaaatatcaataatagcgataattaaaataagtgataatgatcgtcatcaactca 163  Q
    ||||| || ||||||||||  ||| |||||||||||  |||||| |||||||||||||||||||| ||||||||||    
T  9437013 actttaacatataaaatcataaaattatcaataataatgataatgaaaataagtgataatgatcgccatcaactca 9437088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 55 - 165
Target Start/End: Complemental strand, 19434054 - 19433944
Alignment:
Q  55 tgttcaaagggtgtgtttcccgttttgagaaacactttcacttataaaatcaccaaaatatcaataatagcgataattaaaataagtgataatgatcgtc 154  Q
    |||||||||||  |||| ||| |||| | ||||||||| |  || ||||| | ||||||||||||||||   ||| | |||||| ||||||||||||||     
T  19434054 tgttcaaagggcatgttccccatttttataaacactttaagatagaaaattatcaaaatatcaataatattaatagtaaaaatatgtgataatgatcgtt 19433955  T
Q  155 atcaactcaca 165  Q
    |||||||||||    
T  19433954 atcaactcaca 19433944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 95; Significance: 1e-46; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 55 - 165
Target Start/End: Complemental strand, 14649337 - 14649227
Alignment:
Q  55 tgttcaaagggtgtgtttcccgttttgagaaacactttcacttataaaatcaccaaaatatcaataatagcgataattaaaataagtgataatgatcgtc 154  Q
    ||||||||||||||| ||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14649337 tgttcaaagggtgtgcttcccattttgagaaatactttaacttataaaatcaccaaaatatcaataatagcgataattaaaataagtgataatgatcgtc 14649238  T
Q  155 atcaactcaca 165  Q
    |||||||||||    
T  14649237 atcaactcaca 14649227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 55 - 165
Target Start/End: Complemental strand, 14659127 - 14659017
Alignment:
Q  55 tgttcaaagggtgtgtttcccgttttgagaaacactttcacttataaaatcaccaaaatatcaataatagcgataattaaaataagtgataatgatcgtc 154  Q
    ||||||||||||||| ||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14659127 tgttcaaagggtgtgcttcccattttgagaaatactttaacttataaaatcaccaaaatatcaataatagcgataattaaaataagtgataatgatcgtc 14659028  T
Q  155 atcaactcaca 165  Q
    |||||||||||    
T  14659027 atcaactcaca 14659017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 21 - 162
Target Start/End: Complemental strand, 42565206 - 42565065
Alignment:
Q  21 tgaccttaaacatcaatttcaacgatnnnnnnnntgttcaaagggtgtgtttcccgttttgagaaacactttcacttataaaatcaccaaaatatcaata 120  Q
    ||||||||||||||||||||||||||        ||||||||||||||| || || |||||||||| ||||| ||||||||||||||||||||| |||||    
T  42565206 tgaccttaaacatcaatttcaacgataagaaaaatgttcaaagggtgtgctttccattttgagaaatactttaacttataaaatcaccaaaataccaata 42565107  T
Q  121 atagcgataattaaaataagtgataatgatcgtcatcaactc 162  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  42565106 atagcgataattaaaataagtgataataatcgtcatcaactc 42565065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 55 - 196
Target Start/End: Original strand, 47051658 - 47051800
Alignment:
Q  55 tgttcaaagggtgtgtttcccgttttgagaaacactttcacttataaaatcaccaaaatatcaataatagcgataattaaaataagtgataatgatcgtc 154  Q
    ||||||||||||||||| ||| ||||   ||||||||| || || ||||| | ||||||||||||||||   ||| | ||||||  |||||||||||||     
T  47051658 tgttcaaagggtgtgttccccattttataaaacactttaacatagaaaattatcaaaatatcaataatattaatagtgaaaatatatgataatgatcgtt 47051757  T
Q  155 atcaactcaca-acatgacgaaagaactcaattcttagtgatg 196  Q
    ||||||||||| | |||||||||||||||||||| ||||||||    
T  47051758 atcaactcacagatatgacgaaagaactcaattcctagtgatg 47051800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 55 - 165
Target Start/End: Original strand, 29290145 - 29290255
Alignment:
Q  55 tgttcaaagggtgtgtttcccgttttgagaaacactttcacttataaaatcaccaaaatatcaataatagcgataattaaaataagtgataatgatcgtc 154  Q
    |||||||| |||||||| |||  ||||| ||| ||||| |  ||||||||||  |||||| |||||||| ||||| | |||||||| |||||||||||||    
T  29290145 tgttcaaaaggtgtgttccccaatttgataaatactttaaaatataaaatcataaaaatagcaataataacgatattgaaaataagcgataatgatcgtc 29290244  T
Q  155 atcaactcaca 165  Q
    |||||||||||    
T  29290245 atcaactcaca 29290255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 165
Target Start/End: Original strand, 17654496 - 17654605
Alignment:
Q  56 gttcaaagggtgtgtttcccgttttgagaaacactttcacttataaaatcaccaaaatatcaataatagcgataattaaaataagtgataatgatcgtca 155  Q
    |||||||||||||||| ||| |||| | ||| ||||| || || ||||| | ||||||||||||||||   |||   |||||| | |||||||||||| |    
T  17654496 gttcaaagggtgtgttccccatttttataaaaactttaacatagaaaattatcaaaatatcaataatattaatagggaaaatatgcgataatgatcgtta 17654595  T
Q  156 tcaactcaca 165  Q
    ||||||||||    
T  17654596 tcaactcaca 17654605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 121
Target Start/End: Complemental strand, 16099812 - 16099746
Alignment:
Q  55 tgttcaaagggtgtgtttcccgttttgagaaacactttcacttataaaatcaccaaaatatcaataa 121  Q
    ||||||||||||||||| ||| |||| | ||||||||| || || ||||| | ||||||||||||||    
T  16099812 tgttcaaagggtgtgttccccatttttataaacactttaacatagaaaattatcaaaatatcaataa 16099746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 55 - 165
Target Start/End: Original strand, 54352939 - 54353047
Alignment:
Q  55 tgttcaaagggtgtgtttcccgttttgagaaacactttcacttataaaatcaccaaaatatcaataatagcgataattaaaataagtgataatgatcgtc 154  Q
    ||||||||||||||  | ||| |||| | ||||||||| || || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  54352939 tgttcaaagggtgt--tccccatttttataaacactttaacatagaaaatcaccaaaatatcaataatagctataattaaaataagtgataatgatcgtc 54353036  T
Q  155 atcaactcaca 165  Q
    |||||||||||    
T  54353037 atcaactcaca 54353047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 60 - 132
Target Start/End: Original strand, 5359748 - 5359820
Alignment:
Q  60 aaagggtgtgtttcccgttttgagaaacactttcacttataaaatcaccaaaatatcaataatagcgataatt 132  Q
    |||||||||| |||||||||||| ||| ||||| ||||||||||||| ||||||| |||||||| | ||||||    
T  5359748 aaagggtgtgcttcccgttttgataaatactttaacttataaaatcatcaaaataacaataataacaataatt 5359820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 55 - 167
Target Start/End: Original strand, 27562271 - 27562384
Alignment:
Q  55 tgttcaaagggtgtgtttcccgttttg-agaaacactttcacttataaaatcaccaaaatatcaataatagcgataattaaaataagtgataatgatcgt 153  Q
    ||||||||||| ||||| ||| ||||  | ||||||||| || || ||||| | ||||||||||||||||   ||| | |||||| ||||||||||||||    
T  27562271 tgttcaaagggcgtgttccccattttttataaacactttaacatagaaaattatcaaaatatcaataatattaatagtgaaaatatgtgataatgatcgt 27562370  T
Q  154 catcaactcacaac 167  Q
     |||||||||||||    
T  27562371 tatcaactcacaac 27562384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 108 - 166
Target Start/End: Original strand, 11513806 - 11513863
Alignment:
Q  108 caaaatatcaataatagcgataattaaaataagtgataatgatcgtcatcaactcacaa 166  Q
    |||||||||||||||| | ||||| ||||||  ||||||||||||||||||||||||||    
T  11513806 caaaatatcaataataacaataatcaaaatat-tgataatgatcgtcatcaactcacaa 11513863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 6e-27; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 55 - 164
Target Start/End: Complemental strand, 28802643 - 28802534
Alignment:
Q  55 tgttcaaagggtgtgtttcccgttttgagaaacactttcacttataaaatcaccaaaatatcaataatagcgataattaaaataagtgataatgatcgtc 154  Q
    ||||||||| ||||||| ||| |||| | ||||||||| || ||||||||||  ||||||||||||||| ||||||| |||||| |||||||||||||||    
T  28802643 tgttcaaagagtgtgttccccatttttataaacactttaacatataaaatcataaaaatatcaataataacgataatgaaaatatgtgataatgatcgtc 28802544  T
Q  155 atcaactcac 164  Q
    ||||||||||    
T  28802543 atcaactcac 28802534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 88 - 167
Target Start/End: Original strand, 36265553 - 36265632
Alignment:
Q  88 actttcacttataaaatcaccaaaatatcaataatagcgataattaaaataagtgataatgatcgtcatcaactcacaac 167  Q
    ||||| || ||||||||||  ||||||||||||||| ||||||  ||||||||||||||||||| |||||||||||||||    
T  36265553 actttaacatataaaatcataaaaatatcaataataacgataaggaaaataagtgataatgatcctcatcaactcacaac 36265632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 164
Target Start/End: Original strand, 19670504 - 19670555
Alignment:
Q  113 tatcaataatagcgataattaaaataagtgataatgatcgtcatcaactcac 164  Q
    ||||||||||| | |||||||||||| |||||| ||||||||||||||||||    
T  19670504 tatcaataataacaataattaaaatatgtgatattgatcgtcatcaactcac 19670555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 163
Target Start/End: Complemental strand, 30943406 - 30943351
Alignment:
Q  108 caaaatatcaataatagcgataattaaaataagtgataatgatcgtcatcaactca 163  Q
    |||||||||||||||| | ||||||||||||  |||||||||| || |||||||||    
T  30943406 caaaatatcaataataacaataattaaaatatatgataatgattgttatcaactca 30943351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 165
Target Start/End: Original strand, 6023408 - 6023436
Alignment:
Q  137 taagtgataatgatcgtcatcaactcaca 165  Q
    |||||||||||||||||||||||||||||    
T  6023408 taagtgataatgatcgtcatcaactcaca 6023436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0713 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0713
Description:

Target: scaffold0713; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 163
Target Start/End: Complemental strand, 4167 - 4060
Alignment:
Q  56 gttcaaagggtgtgtttcccgttttgagaaacactttcacttataaaatcaccaaaatatcaataatagcgataattaaaataagtgataatgatcgtca 155  Q
    |||||||||||||||| ||| |||| | ||| ||||| || || ||||| | ||||||||||||||||   |||   |||||| | |||||||||||| |    
T  4167 gttcaaagggtgtgttccccatttttataaaaactttaacatagaaaattatcaaaatatcaataatattaatagggaaaatatgcgataatgatcgtta 4068  T
Q  156 tcaactca 163  Q
    ||||||||    
T  4067 tcaactca 4060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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