View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6875A_low_302 (Length: 213)
Name: NF6875A_low_302
Description: NF6875A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6875A_low_302 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 139; Significance: 6e-73; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 6236434 - 6236644
Alignment:
| Q |
1 |
agaaattgaaaacctaggtgataggtgaaaatctaannnnnnnnnnnnnngatcaagcgaaaaaattcaataaaactagagagggccagaacccataaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
6236434 |
agaaattgaaaacctaggtgataggtgaaaatctaattttttttttttt--atcaagcgaagaaattcaataaaactgaagagggccagaacccataaca |
6236531 |
T |
|
| Q |
101 |
aggtctacatcaggaagaaacaaaaacagaaaaggcagaattacatcaaaatcctataataaggaagtcctgaaccctctctagagagaaaagaagcaat |
200 |
Q |
| |
|
| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6236532 |
aagtctacatcaggaagaaacaaaaatagaaaaggcagaattacatcaaaatcctataataaggaagtcctgaaccctctctagagagaaaagaagcaat |
6236631 |
T |
|
| Q |
201 |
aaagctgggtggt |
213 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
6236632 |
aaagcagggtggt |
6236644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University