View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6875A_low_303 (Length: 213)
Name: NF6875A_low_303
Description: NF6875A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6875A_low_303 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 21 - 185
Target Start/End: Complemental strand, 27442269 - 27442105
Alignment:
| Q |
21 |
attacaatggaggtagcggaagattcctatgatagtgttgcatcagaggtagtccaacaagttgctgctatggtacatgctgaagaagatgaagtccaat |
120 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27442269 |
attacaatggaggtagtggaagattcctatgatagtgttgcatcagaggtagtccaacaagttgctgctatggtacatgctgaagaagatgaagtccaat |
27442170 |
T |
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| Q |
121 |
ccaaacaaactgaagaaaatgaagtccaaggtgtgcacattgagaagttccccgaatatgagtat |
185 |
Q |
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| T |
27442169 |
ccaaacaaactgaagaaaatgaagtccaaggtgtgcacattgagaagttccccgaatatgagtat |
27442105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 21 - 185
Target Start/End: Original strand, 12844368 - 12844532
Alignment:
| Q |
21 |
attacaatggaggtagcggaagattcctatgatagtgttgcatcagaggtagtccaacaagttgctgctatggtacatgctgaagaagatgaagtccaat |
120 |
Q |
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| T |
12844368 |
attacaatggaggtagtggaagattcctatgatagtgttgcatcagaggtagtccaacaagttgctgctatggtacatgctgaagaagatgaagtccaat |
12844467 |
T |
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| Q |
121 |
ccaaacaaactgaagaaaatgaagtccaaggtgtgcacattgagaagttccccgaatatgagtat |
185 |
Q |
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| T |
12844468 |
ccaaacaaactgaagaaaatgaagtccaaggtgtgcacattgagaagttccccgaatatgagtat |
12844532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 21 - 185
Target Start/End: Original strand, 45092 - 45256
Alignment:
| Q |
21 |
attacaatggaggtagcggaagattcctatgatagtgttgcatcagaggtagtccaacaagttgctgctatggtacatgctgaagaagatgaagtccaat |
120 |
Q |
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|||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45092 |
attacaatggaggtagtggaagattcctatgatagtgttacatcagaggtagtccaacaagttgctgctatggtacatgctgaagaagatgaagtccaat |
45191 |
T |
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| Q |
121 |
ccaaacaaactgaagaaaatgaagtccaaggtgtgcacattgagaagttccccgaatatgagtat |
185 |
Q |
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| T |
45192 |
ccaaacaaactgaagaaaatgaagtccaaggtgtgcacattgagaagttccccgaatatgagtat |
45256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 21 - 185
Target Start/End: Original strand, 25098612 - 25098776
Alignment:
| Q |
21 |
attacaatggaggtagcggaagattcctatgatagtgttgcatcagaggtagtccaacaagttgctgctatggtacatgctgaagaagatgaagtccaat |
120 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25098612 |
attacaatggaggtagtggaagattcctatgatagtgttgcatcagaggtagtccaacaagttgctgctatggtacatgctgaagaagatgaagtccaat |
25098711 |
T |
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| Q |
121 |
ccaaacaaactgaagaaaatgaagtccaaggtgtgcacattgagaagttccccgaatatgagtat |
185 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
25098712 |
ccaaacaaactgaagaaaatgaagtccaagatgtgcacattgagaagttccccgaatatgagtat |
25098776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 21 - 185
Target Start/End: Original strand, 50438541 - 50438705
Alignment:
| Q |
21 |
attacaatggaggtagcggaagattcctatgatagtgttgcatcagaggtagtccaacaagttgctgctatggtacatgctgaagaagatgaagtccaat |
120 |
Q |
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|||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50438541 |
attacaatggaggtagtggaagattcctatgatagtgtttcatcagaggtagtccaacaagttgctgctatggtacatgctgaagaagatgaagtccaat |
50438640 |
T |
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| Q |
121 |
ccaaacaaactgaagaaaatgaagtccaaggtgtgcacattgagaagttccccgaatatgagtat |
185 |
Q |
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| T |
50438641 |
ccaaacaaactgaagaaaatgaagtccaaggtgtgcacattgagaagttccccgaatatgagtat |
50438705 |
T |
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