View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6875A_low_304 (Length: 213)
Name: NF6875A_low_304
Description: NF6875A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6875A_low_304 |
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Alignment Details
Target: chr8 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 20 - 195
Target Start/End: Original strand, 34575708 - 34575881
Alignment:
| Q |
20 |
agttcttaccaaattaccaaacaaagtttaaatattaaattttgtgttaacattcttatatttaattcatttgcgcatccccatagaaaat-ctaacaga |
118 |
Q |
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| T |
34575708 |
agtttttaccaaattaccaaacaaagtttaaatattaaattttgtgttaacattcttatatttaattcatttgcgcatccccatagaaaatactaacaga |
34575807 |
T |
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| Q |
119 |
tgttcaaagagcacacatgttattgggaaaatagagaagttttgacattcagtaacatatatatattcattgttctt |
195 |
Q |
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| T |
34575808 |
tgttctaagagcacacatgttaat-ggaaaatagagaagttttgacattcagtaac--atatatattcattgttctt |
34575881 |
T |
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Target: chr8; HSP #2
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 20 - 195
Target Start/End: Original strand, 34576495 - 34576668
Alignment:
| Q |
20 |
agttcttaccaaattaccaaacaaagtttaaatattaaattttgtgttaacattcttatatttaattcatttgcgcatccccatagaaaat-ctaacaga |
118 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
34576495 |
agtttttaccaaattaccaaacaaagtttaaatattaaattttgtgttaacattcttatatttaattcatttgcgcatccccatagaaaatactaacaga |
34576594 |
T |
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| Q |
119 |
tgttcaaagagcacacatgttattgggaaaatagagaagttttgacattcagtaacatatatatattcattgttctt |
195 |
Q |
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| T |
34576595 |
tgttctaagagcacacatgttaat-cgaaaatagagaagttttgacattcagtaac--atatatattcattgttctt |
34576668 |
T |
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