View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6875A_low_306 (Length: 211)
Name: NF6875A_low_306
Description: NF6875A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6875A_low_306 |
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Alignment Details
Target: chr8 (Bit Score: 166; Significance: 5e-89; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 21 - 190
Target Start/End: Complemental strand, 32880109 - 32879940
Alignment:
| Q |
21 |
aagataattaaggtgactcgttcccttaagaaccacaaatgacacctagctagttgaagaaggaggagattctaaatcaaaaagacatatgaatgtcttt |
120 |
Q |
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| T |
32880109 |
aagataattaaggtgactcgttcccttaagaaccacaaatgacacctagctagttgaagaaggaggagattctaaatcaaaaagacatatgaatgacttt |
32880010 |
T |
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| Q |
121 |
atacatattcttctaaatcatctatagtgtatagatctttgtcaagtggagtctacaccctttcgtggtt |
190 |
Q |
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| T |
32880009 |
atacatattcttctaaatcatctatagtgtatagatctttgtcaagtggagtctacaccctttcgtggtt |
32879940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 21 - 191
Target Start/End: Complemental strand, 32898981 - 32898811
Alignment:
| Q |
21 |
aagataattaaggtgactcgttcccttaagaaccacaaatgacacctagctagttgaagaaggaggagattctaaatcaaaaagacatatgaatgtcttt |
120 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
32898981 |
aagataattaaggtgactcgttcccttaagaaccacaaatgacacctagctagttgaagaaggaggagattctaaatcaaaaagacatatgaatgacttt |
32898882 |
T |
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| Q |
121 |
atacatattcttctaaatcatctatagtgtatagatctttgtcaagtggagtctacaccctttcgtggttc |
191 |
Q |
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| T |
32898881 |
atacacattcttctaaatcatctatagtgtatagatctttgtcaagtggagtctacatcctttcgtggttc |
32898811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 21 - 191
Target Start/End: Complemental strand, 32884937 - 32884772
Alignment:
| Q |
21 |
aagataattaaggtgactcgttcccttaagaaccacaaatgacacctagctagttgaagaaggaggagattctaaatcaaaaagacatatgaatgtcttt |
120 |
Q |
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| T |
32884937 |
aagataattaaggtgactcgttcccttaagaaccacaaatgacacctagctagttgaag-aggaggagattctatataaaaaagacatatgaatgccttt |
32884839 |
T |
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| Q |
121 |
atacatattcttctaaatcatctatagtgtatagatctttgtcaagtggagtctacaccctttcgtggttc |
191 |
Q |
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||||||||||||||||||||| | | ||| |||||||||||||||||| |||| || |||||||||| |
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| T |
32884838 |
atacatattcttctaaatcatgt----ttcatatatctttgtcaagtggagtgtacatccattcgtggttc |
32884772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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