View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6875A_low_307 (Length: 210)
Name: NF6875A_low_307
Description: NF6875A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6875A_low_307 |
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Alignment Details
Target: chr4 (Bit Score: 91; Significance: 3e-44; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 14 - 128
Target Start/End: Original strand, 17167520 - 17167634
Alignment:
| Q |
14 |
aacaatatggactaaaactacttaaaagaaatcatttggaggacaaatagtaagattttgtttttataaggaaaaacaaaatttgactattttgtagtga |
113 |
Q |
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| T |
17167520 |
aacaatatggactaaaactacttaaaagaaaacatttggaggacaaattgtaagattttgtttttataacggaaaaaaaaattagactattttgtagtga |
17167619 |
T |
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| Q |
114 |
cttaaacatatcaaa |
128 |
Q |
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| T |
17167620 |
cttaaacatatcaaa |
17167634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 14 - 128
Target Start/End: Original strand, 17173097 - 17173211
Alignment:
| Q |
14 |
aacaatatggactaaaactacttaaaagaaatcatttggaggacaaatagtaagattttgtttttataaggaaaaacaaaatttgactattttgtagtga |
113 |
Q |
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| T |
17173097 |
aacaatatggactaaaactacttaaaagaaaacatttggaggacaaattgtaagattttgtttttataacggaaaaaaaaattagactattttgtagtga |
17173196 |
T |
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| Q |
114 |
cttaaacatatcaaa |
128 |
Q |
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| T |
17173197 |
cttaaacatatcaaa |
17173211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 17251655 - 17251590
Alignment:
| Q |
14 |
aacaatatggactaaaactacttaaaagaaatcatttggaggacaaatagtaagattttgttttta |
79 |
Q |
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| T |
17251655 |
aacaatatggactaaaactacttaaaagaaatcatttggaggacaaatagtaagattttgttttta |
17251590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 71 - 128
Target Start/End: Complemental strand, 17251245 - 17251188
Alignment:
| Q |
71 |
ttgtttttataaggaaaaacaaaatttgactattttgtagtgacttaaacatatcaaa |
128 |
Q |
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| T |
17251245 |
ttgtttttataagcaaaaacaaaatttgactattttgtagtgacttaaacatatcaaa |
17251188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 123 - 191
Target Start/End: Complemental strand, 17250506 - 17250438
Alignment:
| Q |
123 |
atcaaatgcttttatattttgagggacaattgacttatttaacctttttattaataatatgtagagcat |
191 |
Q |
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| T |
17250506 |
atcaaatgtttgtatatttggaaggaccatttacttatttaacctttttattaataatatgtagagcat |
17250438 |
T |
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