View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6875A_low_311 (Length: 208)
Name: NF6875A_low_311
Description: NF6875A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6875A_low_311 |
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Alignment Details
Target: chr1 (Bit Score: 94; Significance: 4e-46; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 7 - 111
Target Start/End: Complemental strand, 24621328 - 24621223
Alignment:
| Q |
7 |
attgtaacctgcagaacaacaaggagtcacactctccctgtgtaagatatatggaaataagctagaatggtgcaaaacaaccatgc-tttgttgaatgta |
105 |
Q |
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| T |
24621328 |
attgtaacctgcagaacaacaaggagtcacactctccttgtgtaagatatatggaaataagctagaatggtgcaaaacaaccatgcttttgttgaatgta |
24621229 |
T |
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| Q |
106 |
gattac |
111 |
Q |
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|||||| |
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| T |
24621228 |
gattac |
24621223 |
T |
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Target: chr1; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 150 - 200
Target Start/End: Complemental strand, 24621112 - 24621062
Alignment:
| Q |
150 |
tttgattataaaaatacgcctttgattgtcttggcttgtgacatattcttg |
200 |
Q |
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| T |
24621112 |
tttgattataaaaatacgcctttgattgtcttggcttgtgacattttcttg |
24621062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 45 - 111
Target Start/End: Original strand, 47569680 - 47569747
Alignment:
| Q |
45 |
tgtgtaagatatatggaaataagctagaatggtgcaaaacaaccatgc-tttgttgaatgtagattac |
111 |
Q |
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| T |
47569680 |
tgtgtaagatatatgaaaataagctagggtggtgcaaaagaaccatgcttttgtggaatgtagattac |
47569747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 150 - 200
Target Start/End: Original strand, 47569859 - 47569909
Alignment:
| Q |
150 |
tttgattataaaaatacgcctttgattgtcttggcttgtgacatattcttg |
200 |
Q |
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| T |
47569859 |
tttgattatataaatacgcctatgattgtcttggcttgttacattttcttg |
47569909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 8331955 - 8332023
Alignment:
| Q |
19 |
agaacaacaaggagtcacactctccctgtgtaagatatatggaaataagctagaatggtgcaaaacaaccat |
90 |
Q |
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| T |
8331955 |
agaacaataaggaggcacactct---tatgtaagatatatgaaaataagctaggatggtgcaaaagaaccat |
8332023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 45 - 111
Target Start/End: Original strand, 16375735 - 16375802
Alignment:
| Q |
45 |
tgtgtaagatatatggaaataagctagaatggtgcaaaacaaccatgc-tttgttgaatgtagattac |
111 |
Q |
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| T |
16375735 |
tgtgtaagatatatggaaatacgttaggatggtacaaaagaaccatgcttttgtggtatgtagattac |
16375802 |
T |
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