View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6875A_low_314 (Length: 207)
Name: NF6875A_low_314
Description: NF6875A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6875A_low_314 |
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Alignment Details
Target: chr4 (Bit Score: 120; Significance: 1e-61; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 40735741 - 40735544
Alignment:
| Q |
1 |
aggctgctccca--atttaacaccatgatgagtgaggtgcggatcatcatattaacttaaagagcaatcatataagtgggctgatcaacatcacatcatc |
98 |
Q |
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| T |
40735741 |
aggctgctcccataatttaacaccatgatgagtgaggtgtggatcttcgtattaacttaa-gaacaatcatataaatggattgatcaacatcacatcatc |
40735643 |
T |
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| Q |
99 |
ttaaattagatatgaatcatctcacagatatatcacattcgcatgtactttgctatataatataaatgggcggaccaacatctcattattttaaattagg |
198 |
Q |
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| T |
40735642 |
ttaaattagatatgagtcatctcacagatatatcaca-tcgcatgtactttcctatataatataa------ggaccaacatctcattattttaaattagg |
40735550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 68 - 164
Target Start/End: Complemental strand, 40735422 - 40735331
Alignment:
| Q |
68 |
atataagtgggctgatcaacatcacatcatcttaaattagatatgaatcatctcacagatatatcacattcgcatgtactttgctatataatataaa |
164 |
Q |
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| T |
40735422 |
atataagtggtcggattaacatcacatcaccttaaattagatctgagtcatctcacttatatatcac-----tatgtactttgcaatataatataaa |
40735331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 68 - 197
Target Start/End: Complemental strand, 40735506 - 40735383
Alignment:
| Q |
68 |
atataagtgggctgatcaacatcacatcatcttaaattagatatgaatcatctcacagatatatcacattcgcatgtactttgctatataatataaatgg |
167 |
Q |
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| T |
40735506 |
atataagttggtggatcaacatcacatcaccttaaattaggtctgagtcatctcacttatatatca------catgtactttgctgtataatataagtgg |
40735413 |
T |
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| Q |
168 |
gcggaccaacatctcattattttaaattag |
197 |
Q |
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| T |
40735412 |
tcggattaacatcacatcaccttaaattag |
40735383 |
T |
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