View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6875A_low_316 (Length: 205)
Name: NF6875A_low_316
Description: NF6875A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6875A_low_316 |
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Alignment Details
Target: chr1 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 19 - 194
Target Start/End: Complemental strand, 30079096 - 30078921
Alignment:
| Q |
19 |
atcaaccagatcaagtgaagccgcatccctcctcgagatattataaccccaaagataacgcgcaatatcaaacccagcataaaacggaacaaaaatcgca |
118 |
Q |
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| T |
30079096 |
atcaaccagatcaagtgaagccgcatccctcctcgagatattataaccccaaagataacgcgcaatatcaaacccagcataaaacggaacaaaaatcgca |
30078997 |
T |
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| Q |
119 |
gcagcaatcgaagaatcctcagtcaaacactcatactgcttcatcctattactaaatataacatcaacaccaaact |
194 |
Q |
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| T |
30078996 |
gcagcaattgaagaatcctcagtcaaacactcatactgcttcatcctattactaaatataacatcaacagcaaact |
30078921 |
T |
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Target: chr7 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 35 - 164
Target Start/End: Original strand, 39486067 - 39486196
Alignment:
| Q |
35 |
gaagccgcatccctcctcgagatattataaccccaaagataacgcgcaatatcaaacccagcataaaacggaacaaaaatcgcagcagcaatcgaagaat |
134 |
Q |
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| T |
39486067 |
gaagcagcatctctcattgaaatattatacccccaaagataacgtgcaatgtcaaatccagcataaaacggtacaaaaacagcagcagcaattgaagaat |
39486166 |
T |
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| Q |
135 |
cctcagtcaaacactcatactgcttcatcc |
164 |
Q |
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| T |
39486167 |
catttgtcaaacattcatattgtttcatcc |
39486196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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