View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6875A_low_33 (Length: 409)

Name: NF6875A_low_33
Description: NF6875A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6875A_low_33
NF6875A_low_33
[»] chr1 (1 HSPs)
chr1 (20-391)||(34900536-34900908)
[»] chr2 (4 HSPs)
chr2 (245-343)||(26894639-26894737)
chr2 (245-343)||(26900078-26900176)
chr2 (245-343)||(4405789-4405887)
chr2 (127-181)||(20023954-20024008)
[»] scaffold0012 (1 HSPs)
scaffold0012 (263-368)||(183182-183286)
[»] chr6 (1 HSPs)
chr6 (245-343)||(9814699-9814797)
[»] chr7 (3 HSPs)
chr7 (293-344)||(29467354-29467405)
chr7 (287-349)||(30944960-30945022)
chr7 (287-343)||(30943933-30943989)


Alignment Details
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 20 - 391
Target Start/End: Complemental strand, 34900908 - 34900536
Alignment:
Q  20 catcaccattagctagaagagaaccacacaaaggcacaaacatttatttaattcacaatc-gttgtatatttgaaaacttataaagtttgtaaaagttgt 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  34900908 catcaccattagctagaagagaaccacacaaaggcacaaacatttatttaattcacaatcagttgtatatttgaaaacttataaagtttgtaaaagttgt 34900809  T
Q  119 caattaaataaaaatatttcaaaagaaattccaacgttgtaaggaggtggaatcaaaaataacttttttaaaataaagtgtagaaaaaactcaatttaac 218  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  34900808 caattaaataaaaatatttcaaaagaaattcgaacgttgtaaggaggtggaatcaaaaataacttttttaaaataaagtgtagaaaaaactcaatttagt 34900709  T
Q  219 aatataatcataaccagtgaggcgaaaactagttccatttcatcgatagctcttttctcctaagagctgtcttccccttagtggtggcttcatctaacat 318  Q
    |||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  34900708 aatataatcataacgagtgaggcgagaactagttccatttcattgatagctcttttcttctaagagctgtctttcccttagtggtggcttcatctaacat 34900609  T
Q  319 ataactcttttctctcgattcaaaaacaaaaacataagatatttctcaattaaggagtttacatccctttgat 391  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  34900608 ataactcttttctctcgattcaaaaacaaaaacataagatatttctcaattaaggagtttacatctctttgat 34900536  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 245 - 343
Target Start/End: Original strand, 26894639 - 26894737
Alignment:
Q  245 aactagttccatttcatcgatagctcttttctcctaagagctgtcttccccttagtggtggcttcatctaacatataactcttttctctcgattcaaaa 343  Q
    |||||| ||||| || | ||||||||||| || |||||||  | ||| | ||||||||| ||||||||||||| |||||||||||||||||| ||||||    
T  26894639 aactagctccatctcgttgatagctctttcctgctaagagtggcctttctcttagtggtagcttcatctaacagataactcttttctctcgactcaaaa 26894737  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 245 - 343
Target Start/End: Original strand, 26900078 - 26900176
Alignment:
Q  245 aactagttccatttcatcgatagctcttttctcctaagagctgtcttccccttagtggtggcttcatctaacatataactcttttctctcgattcaaaa 343  Q
    |||||| ||||| || | ||||||||||| || |||||||  | ||| | ||||||||| ||||||||||||| |||||||||||||||||| ||||||    
T  26900078 aactagctccatctcgttgatagctctttcctgctaagagtggcctttctcttagtggtagcttcatctaacagataactcttttctctcgactcaaaa 26900176  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 245 - 343
Target Start/End: Complemental strand, 4405887 - 4405789
Alignment:
Q  245 aactagttccatttcatcgatagctcttttctcctaagagctgtcttccccttagtggtggcttcatctaacatataactcttttctctcgattcaaaa 343  Q
    |||||| ||||| || | ||||||||||| || |||||||  | ||| ||||||||||| ||||||||||||  ||| |||||||||||||| ||||||    
T  4405887 aactagctccatctcgttgatagctctttcctactaagagtggcctttcccttagtggtagcttcatctaacggatagctcttttctctcgactcaaaa 4405789  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 181
Target Start/End: Original strand, 20023954 - 20024008
Alignment:
Q  127 taaaaatatttcaaaagaaattccaacgttgtaaggaggtggaatcaaaaataac 181  Q
    |||||||||||||||||||| || |||||||||| ||| |||||||| |||||||    
T  20023954 taaaaatatttcaaaagaaaatcaaacgttgtaaagagatggaatcagaaataac 20024008  T

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Target: scaffold0012 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 263 - 368
Target Start/End: Original strand, 183182 - 183286
Alignment:
Q  263 gatagctcttttctcctaagagctgtcttccccttagtggtggcttcatctaacatataactcttttctctcgattcaaaaacaaaaacataagatattt 362  Q
    ||||||||||||||||||||||    ||| || |||||||| ||| || |||||| |||||||||||||||||| || ||||||||||| ||| ||||||    
T  183182 gatagctcttttctcctaagagtgacctttcctttagtggtagctccacctaacaaataactcttttctctcgactc-aaaacaaaaacgtaaaatattt 183280  T
Q  363 ctcaat 368  Q
     |||||    
T  183281 ttcaat 183286  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 343
Target Start/End: Complemental strand, 9814797 - 9814699
Alignment:
Q  245 aactagttccatttcatcgatagctcttttctcctaagagctgtcttccccttagtggtggcttcatctaacatataactcttttctctcgattcaaaa 343  Q
    |||||| ||||| || | ||||||||||| || |||||||  | ||| | ||||||||| ||||||||||||  ||| |||||||||||||| ||||||    
T  9814797 aactagctccatctcgttgatagctctttcctactaagagtggcctttctcttagtggtagcttcatctaacggatagctcttttctctcgactcaaaa 9814699  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 293 - 344
Target Start/End: Original strand, 29467354 - 29467405
Alignment:
Q  293 cccttagtggtggcttcatctaacatataactcttttctctcgattcaaaaa 344  Q
    ||||||||||| | ||||||||||| ||| |||||||||||||| |||||||    
T  29467354 cccttagtggtagattcatctaacagatatctcttttctctcgactcaaaaa 29467405  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 287 - 349
Target Start/End: Complemental strand, 30945022 - 30944960
Alignment:
Q  287 gtcttccccttagtggtggcttcatctaacatataactcttttctctcgattcaaaaacaaaa 349  Q
    ||||| ||||||||||| ||| ||||||||| ||| |||||||||||||| | ||||| ||||    
T  30945022 gtctttcccttagtggtagctccatctaacagatagctcttttctctcgactaaaaaaaaaaa 30944960  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 287 - 343
Target Start/End: Complemental strand, 30943989 - 30943933
Alignment:
Q  287 gtcttccccttagtggtggcttcatctaacatataactcttttctctcgattcaaaa 343  Q
    ||||| ||||||||||| ||| ||||||||  ||| |||||||||||||| ||||||    
T  30943989 gtctttcccttagtggtagctccatctaacggatagctcttttctctcgactcaaaa 30943933  T

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