View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6875A_low_35 (Length: 407)
Name: NF6875A_low_35
Description: NF6875A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6875A_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 17 - 318
Target Start/End: Complemental strand, 3272417 - 3272113
Alignment:
| Q |
17 |
aacagaatgtaaaactcccttcaaagaaaatgctttcttttgaacaatctatctaaccacattgcttgtgaaattgctgttatatgatgtaaaaaacatg |
116 |
Q |
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| T |
3272417 |
aacagaatgtaaaactcccttcaaagaaaatggtttcttttgaacaatctatctaaccacattgcttgtgaaattgctgttatatgatgtaaaaaacatg |
3272318 |
T |
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| Q |
117 |
aaaccacactgtttgtcnnnnnnnnnnnnt---ttgtgttaaccctccggtttttagggaaagaggccctagcaatccggttcggttagaaggtaaataa |
213 |
Q |
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| T |
3272317 |
aaaccacactgtttgtcaaaaaaaaaaaaaaaattgtgttaaccctccggtttttaggggaagaggccctagcaatccggttcggttagaaggtaaataa |
3272218 |
T |
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| Q |
214 |
agtctgaccaataattatttttactagaaatcgaacttagtttttcctgaacgattaattctagagagctcattaaccatttgagcaaaatcacttgatt |
313 |
Q |
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| T |
3272217 |
agtctgaccaataattatttctactaggaatcgaacttagtttttcctgaacgattaattctagagagctcattaaccatttgaacaaaatcacttgatt |
3272118 |
T |
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| Q |
314 |
aatgg |
318 |
Q |
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||||| |
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| T |
3272117 |
aatgg |
3272113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 339 - 407
Target Start/End: Complemental strand, 3272028 - 3271960
Alignment:
| Q |
339 |
acaagatatgtaattcaccttgcagtattgttttggagatagcacattctgtggtcctccatcatatta |
407 |
Q |
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| T |
3272028 |
acaagatatgtaattcaccttgcaatattgttttggagatagcacattctgtggtcctccatcatatta |
3271960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 241 - 313
Target Start/End: Complemental strand, 46476972 - 46476900
Alignment:
| Q |
241 |
aaatcgaacttagtttttcctgaacgattaattctaga-gagctcattaaccatttgagcaaaatcacttgatt |
313 |
Q |
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| T |
46476972 |
aaatcgaactttgtttctcctgaacgattcgttctagaggagctcattaacca-ttgagctcaatcacttgatt |
46476900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 202 - 250
Target Start/End: Complemental strand, 577465 - 577417
Alignment:
| Q |
202 |
gaaggtaaataaagtctgaccaataattatttttactagaaatcgaact |
250 |
Q |
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|||||||| |||| ||||||||||||||||||| |||| ||||||||| |
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| T |
577465 |
gaaggtaagtaaaatctgaccaataattattttcactacgaatcgaact |
577417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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