View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6875A_low_37 (Length: 403)
Name: NF6875A_low_37
Description: NF6875A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6875A_low_37 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Original strand, 49006905 - 49007307
Alignment:
| Q |
1 |
agatgatgagatgcctaatatcccctcaagatggaaaggcaagtgtgaaaatggtactcaatttgattcctcattgtgcaacaaaaaactcataggagct |
100 |
Q |
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| T |
49006905 |
agatgatgagatgcctaatatcccctcaagatggaaaggcaagtgtgaaaatggtactcaatttgattcctcattgtgcaacaaaaaactcataggagct |
49007004 |
T |
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| Q |
101 |
cgattctttaacaaaggattactagcaaataatcctaacatcactataatcatgaactccacacgtgacatagacggtcatggtactcacacttcaacca |
200 |
Q |
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| T |
49007005 |
cgattctttaacaaaggattactagcaaataatcctaacatcactataaccatgaactccacacgtgacatagacggtcatggtactcacacttcaacca |
49007104 |
T |
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| Q |
201 |
ctgctgctggaagtaaagttgaggatgcatcctacttcggctatgccgctggatcagccataggtatcactaaaatatctcacttattgttaacttgatc |
300 |
Q |
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| T |
49007105 |
ctgctgctggaagtaaagttgaggatgcatccttcttcggctatgccgctggatcagccataggtatcactaaaatatctcacttattgttaacttgatc |
49007204 |
T |
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| Q |
301 |
aacaacgaatactggaggtttttatttataatacatatgaatccatatcaaaattaaccaaatttatatcgaataataggcatggctccacatgctcatg |
400 |
Q |
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| T |
49007205 |
aacaacgaatactggaggtttttatttataatacatatgaatccatatcaaaattaaccaaatttatatcgaataataggcatggctccacatgctcatg |
49007304 |
T |
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| Q |
401 |
tat |
403 |
Q |
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| T |
49007305 |
tat |
49007307 |
T |
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Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 77 - 258
Target Start/End: Complemental strand, 34963741 - 34963560
Alignment:
| Q |
77 |
tgcaacaaaaaactcataggagctcgattctttaacaaaggattactagcaaataatcctaacatcactataatcatgaactccacacgtgacatagacg |
176 |
Q |
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|||||||| |||||||| |||||| |||||| |||| ||||||| ||||||| ||||||||||||| || | |||||||||||||||| ||| | |
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| T |
34963741 |
tgcaacaagaaactcattggagctaaattcttcaacagaggattattagcaaaatatcctaacatcaccttaggattaaactccacacgtgacacagaag |
34963642 |
T |
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| Q |
177 |
gtcatggtactcacacttcaaccactgctgctggaagtaaagttgaggatgcatcctacttcggctatgccgctggatcagc |
258 |
Q |
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| T |
34963641 |
gtcatggaactcatacttcaacaacagcagctggaagcagagttgaccatgcatcattctttggttatgcggctggaacagc |
34963560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 153 - 246
Target Start/End: Complemental strand, 21688054 - 21687961
Alignment:
| Q |
153 |
tgaactccacacgtgacatagacggtcatggtactcacacttcaaccactgctgctggaagtaaagttgaggatgcatcctacttcggctatgc |
246 |
Q |
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| T |
21688054 |
tgaactccacacgtgacacaaacggtcacgggacacatacttcaacaacagcagctggaagcaaagttgatggtgcatctttctttggctatgc |
21687961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 302
Target Start/End: Original strand, 37067889 - 37067929
Alignment:
| Q |
262 |
aggtatcactaaaatatctcacttattgttaacttgatcaa |
302 |
Q |
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| T |
37067889 |
aggtattactaaaatatctcatttattgataacttgatcaa |
37067929 |
T |
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