View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6875A_low_41 (Length: 384)
Name: NF6875A_low_41
Description: NF6875A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6875A_low_41 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 21 - 384
Target Start/End: Original strand, 33178063 - 33178425
Alignment:
| Q |
21 |
atcacactttgtgggggcagagttgcatgattaatttatttaggaacacaataatttcttgatgatggggctaaaactaatttataagggctaaataaaa |
120 |
Q |
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| T |
33178063 |
atcacactttgtgggggcagggttgcatgattaatttatttaggaacacaataatttcttgatgatggggctaaaactaatttataagggctaaataaaa |
33178162 |
T |
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| Q |
121 |
cattaagagcctgcatgtatatgacaaaatccatgttgtagtccaaagtattttacaaaacgaggttatagtgacaaccgaatcttttgtttgaataata |
220 |
Q |
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| T |
33178163 |
cattaagagcctgcatgtatatgacaaaatccatgttgtagtccaaagtattttacaaaacgaggttatagtgacaaccgaatcttttgtttgaataata |
33178262 |
T |
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| Q |
221 |
atataagtgattgtgcaaattaaaagatctatttcagatttttggatggaggaaaataaaataagttaaggnnnnnnnnnnnnacaaggaataagttatg |
320 |
Q |
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| T |
33178263 |
atataagtgattgtgcaaattaaaagatctatttcagatttgtggatggaggaacataaaataagttaagg-ttttttattttacaaggaataagttaag |
33178361 |
T |
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| Q |
321 |
gttattctgcaccacttttactttaatccctttcttactctccacacttaccgtaccatgatga |
384 |
Q |
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| T |
33178362 |
gttattctgcacaactttcactttaatccgtttcttactctccacacttaccgtaccatgatga |
33178425 |
T |
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