View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6875A_low_44 (Length: 379)
Name: NF6875A_low_44
Description: NF6875A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6875A_low_44 |
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Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 16 - 366
Target Start/End: Original strand, 55427508 - 55427858
Alignment:
| Q |
16 |
tggacatccgaaattgagatcttatcaatgtcactggaagttatgttttttatcccagtattttctagcccactgcttgtccagttgacaggaaccagaa |
115 |
Q |
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| T |
55427508 |
tggacattcgaaattgagatcttatcaatgtcactggaagttatgttttttatcccagcattttctagcccactgcttgtccagttgacaggaaccagaa |
55427607 |
T |
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| Q |
116 |
ccgcccacgccaggaatgctataggaacaaagattttaagtctgcacnnnnnnnnnnnnnnnnnnnncatcagtgatcatattctccaatatggtatatt |
215 |
Q |
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| T |
55427608 |
ccgcccacgccaggaatgctataggaacaaagattttaagtctgcacaaaaagaaacaaaaacaaaacatcagtgatcatattctccaatatggtatatt |
55427707 |
T |
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| Q |
216 |
caaacgctgtccataattattgatgatcataccctaacaagtaaatcctcaagtaaacaacagagtccaatccagcatggtcaataagctcaggttccgg |
315 |
Q |
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| T |
55427708 |
caaacgctgtccataatgattgatgatcataccctaacaagtaaatcctcaagtaaacagcagagtccaatccagcatggtcaataagctcaggttccgg |
55427807 |
T |
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| Q |
316 |
cattctaagtgcagccggcatccaattcaaaaaccgaatatatgatgtcca |
366 |
Q |
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| T |
55427808 |
cattctaagtgcagccggcatccaattcaaaaaccgaatatatgatctcca |
55427858 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 350
Target Start/End: Complemental strand, 37418500 - 37418404
Alignment:
| Q |
254 |
aagtaaatcctcaagtaaacaacagagtccaatccagcatggtcaataagctcaggttccggcattctaagtgcagccggcatccaattcaaaaacc |
350 |
Q |
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| T |
37418500 |
aagtagatcctcaagtatacagcagaatccaagcctgcatgttcaattagttcgggttccggcatttgcaatgcagcaggcatccagttcaagaacc |
37418404 |
T |
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