View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6875A_low_46 (Length: 369)
Name: NF6875A_low_46
Description: NF6875A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6875A_low_46 |
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Alignment Details
Target: chr8 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 187 - 348
Target Start/End: Complemental strand, 38124808 - 38124647
Alignment:
| Q |
187 |
ttcagctgtgtaagtagaaaaaagtgttttcaactgtagatcgtggaatatagcagtttgttcaaactctattaagctacagagtttcatagctactatt |
286 |
Q |
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| T |
38124808 |
ttcagctgtgtaagtagaaaaaagtgttttcaagtgtagatcgtggaatatagcagtttgttcaaactctattaagttacagagtttcatagctactatt |
38124709 |
T |
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| Q |
287 |
tgacatcactttgttctaaacagcgtatcacgaaccaatagcaatttatttaaattccatag |
348 |
Q |
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| T |
38124708 |
tgacatcactttgttctaaacagcgtatcacgaaccaatagcaatttatttaaattccatag |
38124647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 21 - 153
Target Start/End: Complemental strand, 38124969 - 38124840
Alignment:
| Q |
21 |
atcagcgacaaaactgtcaaaatctaacatatttaatgataatgattctcttcttcttctgataataataagattgcattcaatatcttcccagcctgat |
120 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |
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| T |
38124969 |
atcagcgacaaaactgtcaaaatctaacatatttaatgataatgattctcttcttct---gataataataagattgcattcaatatcttcccagcctaat |
38124873 |
T |
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| Q |
121 |
aaaatccatggtcttatactcctttccattgag |
153 |
Q |
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| T |
38124872 |
aaaatccatggtcttatactcctttccattgag |
38124840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 327
Target Start/End: Original strand, 13510301 - 13510345
Alignment:
| Q |
283 |
tatttgacatcactttgttctaaacagcgtatcacgaaccaatag |
327 |
Q |
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| T |
13510301 |
tatttgacatcactttgtactaaatagcgtttcacgaaacaatag |
13510345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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