View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6875A_low_50 (Length: 365)

Name: NF6875A_low_50
Description: NF6875A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6875A_low_50
NF6875A_low_50
[»] scaffold0728 (2 HSPs)
scaffold0728 (2-362)||(1440-1796)
scaffold0728 (2-362)||(6380-6736)
[»] chr6 (13 HSPs)
chr6 (5-312)||(17185636-17185938)
chr6 (16-153)||(10382706-10382843)
chr6 (18-53)||(19255883-19255918)
chr6 (18-53)||(33640161-33640196)
chr6 (9-59)||(900707-900757)
chr6 (20-53)||(503396-503429)
chr6 (18-53)||(5085888-5085923)
chr6 (2-53)||(9199098-9199149)
chr6 (2-121)||(17110985-17111104)
chr6 (23-118)||(30613887-30613982)
chr6 (2-53)||(34180175-34180226)
chr6 (3-53)||(25350466-25350516)
chr6 (38-107)||(3973646-3973715)
[»] chr1 (7 HSPs)
chr1 (24-318)||(25090599-25090888)
chr1 (30-108)||(1073766-1073844)
chr1 (18-53)||(25504855-25504890)
chr1 (4-53)||(52470030-52470079)
chr1 (23-63)||(39477382-39477422)
chr1 (2-53)||(47106527-47106578)
chr1 (3-53)||(52691715-52691765)
[»] chr3 (9 HSPs)
chr3 (10-318)||(16238740-16239043)
chr3 (3-83)||(25132318-25132398)
chr3 (2-120)||(16785428-16785543)
chr3 (3-63)||(22734565-22734625)
chr3 (2-59)||(17620287-17620344)
chr3 (10-63)||(30435286-30435339)
chr3 (2-51)||(52250970-52251019)
chr3 (3-51)||(7163745-7163793)
chr3 (12-52)||(28308720-28308760)
[»] chr7 (9 HSPs)
chr7 (2-116)||(9084230-9084344)
chr7 (2-53)||(27544459-27544510)
chr7 (18-53)||(45992819-45992854)
chr7 (10-59)||(11338984-11339033)
chr7 (2-59)||(28173822-28173879)
chr7 (18-53)||(25924313-25924348)
chr7 (18-59)||(5865344-5865385)
chr7 (9-53)||(22819570-22819614)
chr7 (3-51)||(30573189-30573237)
[»] chr5 (5 HSPs)
chr5 (2-59)||(23923086-23923143)
chr5 (3-51)||(7003456-7003504)
chr5 (3-55)||(18891752-18891804)
chr5 (18-53)||(11574556-11574591)
chr5 (3-49)||(34338130-34338176)
[»] chr8 (6 HSPs)
chr8 (18-53)||(4987927-4987962)
chr8 (20-53)||(12243587-12243620)
chr8 (3-63)||(5584927-5584987)
chr8 (2-54)||(30926716-30926768)
chr8 (23-53)||(19384577-19384607)
chr8 (2-51)||(35029467-35029516)
[»] chr4 (8 HSPs)
chr4 (18-53)||(19647952-19647987)
chr4 (19-55)||(20544325-20544361)
chr4 (18-53)||(8935318-8935353)
chr4 (18-53)||(49926128-49926163)
chr4 (15-52)||(11773356-11773393)
chr4 (2-59)||(28713164-28713221)
chr4 (23-51)||(7663106-7663134)
chr4 (1-53)||(20395839-20395891)
[»] chr2 (6 HSPs)
chr2 (10-58)||(43689099-43689147)
chr2 (2-53)||(31093496-31093547)
chr2 (11-53)||(21517683-21517725)
chr2 (20-53)||(12525184-12525217)
chr2 (9-53)||(22725287-22725331)
chr2 (3-51)||(43310504-43310552)
[»] scaffold0418 (1 HSPs)
scaffold0418 (23-51)||(7920-7948)
[»] scaffold0016 (1 HSPs)
scaffold0016 (3-51)||(28027-28075)
[»] scaffold0007 (1 HSPs)
scaffold0007 (1-53)||(182372-182424)


Alignment Details
Target: scaffold0728 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: scaffold0728
Description:

Target: scaffold0728; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 2 - 362
Target Start/End: Original strand, 1440 - 1796
Alignment:
Q  2 gtggagaaggaggttatgggcgtgggaggaggagatgttagtggagtgtaggttgttattattgattgttgtgttgcaggttaatgttgataatgtcttg 101  Q
    ||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |    
T  1440 gtggagaaggaagttacgggcgtgggaggaggaaatgttagtggagtgtaggttgttattattgattgttgtgctgcaggttaatgttgatgatgtctgg 1539  T
Q  102 tcttggatacctgatccagcagtaggctattcaattagaggggcttatcgcatgcttacaggtgggacgacttccattcctactactctggtggtacatg 201  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  1540 tcttggatacctgatccagcagtaggctatacaattagaggggcttatcgcatgcttacaggtgggacgacttccattcctactactctggtggtacctg 1639  T
Q  202 cgtccctcctttggaggaaagatggatgttcctctaaaggtctctattttttggttgccgcctttttcggaacagattgcatatgaaggttaacttattt 301  Q
    ||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||    
T  1640 cgtccctcctttggaggaaa----gatgttcctctaaaggtctctattttttggttgccgcctttttcagaacagattgcatacgaaggttaatttattt 1735  T
Q  302 cgaagggggattattcaacaagacgctctactgtttctaccgaatgtggggtgattgagtc 362  Q
    ||||||||| |||||||||||||||||||||| | |||||||||||||||||||| |||||    
T  1736 cgaaggggggttattcaacaagacgctctactatgtctaccgaatgtggggtgatcgagtc 1796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0728; HSP #2
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 2 - 362
Target Start/End: Original strand, 6380 - 6736
Alignment:
Q  2 gtggagaaggaggttatgggcgtgggaggaggagatgttagtggagtgtaggttgttattattgattgttgtgttgcaggttaatgttgataatgtcttg 101  Q
    ||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |    
T  6380 gtggagaaggaagttacgggcgtgggaggaggaaatgttagtggagtgtaggttgttattattgattgttgtgctgcaggttaatgttgatgatgtctgg 6479  T
Q  102 tcttggatacctgatccagcagtaggctattcaattagaggggcttatcgcatgcttacaggtgggacgacttccattcctactactctggtggtacatg 201  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  6480 tcttggatacctgatccagcagtaggctatacaattagaggggcttatcgcatgcttacaggtgggacgacttccattcctactactctggtggtacctg 6579  T
Q  202 cgtccctcctttggaggaaagatggatgttcctctaaaggtctctattttttggttgccgcctttttcggaacagattgcatatgaaggttaacttattt 301  Q
    ||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||    
T  6580 cgtccctcctttggaggaaa----gatgttcctctaaaggtctctattttttggttgccgcctttttcagaacagattgcatacgaaggttaatttattt 6675  T
Q  302 cgaagggggattattcaacaagacgctctactgtttctaccgaatgtggggtgattgagtc 362  Q
    ||||||||| |||||||||||||||||||||| | |||||||||||||||||||| |||||    
T  6676 cgaaggggggttattcaacaagacgctctactatgtctaccgaatgtggggtgatcgagtc 6736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 95; Significance: 2e-46; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 5 - 312
Target Start/End: Original strand, 17185636 - 17185938
Alignment:
Q  5 gagaaggaggttatgggcgtgggaggaggagatgttagtggagtgtaggttgttattattgattgttgtgttgcaggttaatgttgataatgtcttgtct 104  Q
    |||| |||||||| | ||||||||||||| | | |||| ||||||||||| | ||||||||| ||||||||||||||||||||||||| |||||| ||||    
T  17185636 gagacggaggttacgagcgtgggaggaggggttattagaggagtgtaggtcgctattattgaatgttgtgttgcaggttaatgttgatgatgtctggtct 17185735  T
Q  105 tggatacctgatccagcagtaggctattcaattagaggggcttatcgcatgcttacaggtgggacgacttccattcctactactctggtggtacatgcgt 204  Q
    ||||| |||||||| |||||  | ||| |  |||||||||||||||||| || |||| |||||| | || || ||| ||||||||  ||||||| |||      
T  17185736 tggattcctgatccggcagttcgttataccgttagaggggcttatcgcacgcatacaagtgggatggctcccgttcttactactccagtggtacctgcaa 17185835  T
Q  205 ccctcctttggaggaaagatggatgttcctctaaaggtctctattttttggttgccgcctttttcggaacagattgcatatgaaggttaacttatttcga 304  Q
    | ||| |||||||||||     ||||| ||||||||||||||| |||||||||| ||||| ||||  |||||||||| || ||||  ||| ||||||| |    
T  17185836 ctctcatttggaggaaa----aatgtttctctaaaggtctcta-tttttggttggcgcctatttcataacagattgcctacgaagactaatttatttcta 17185930  T
Q  305 agggggat 312  Q
    ||||||||    
T  17185931 agggggat 17185938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 16 - 153
Target Start/End: Original strand, 10382706 - 10382843
Alignment:
Q  16 tatgggcgtgggaggaggagatgttagtggagtgtaggttgttattattgattgttgtgttgcaggttaatgttgataatgtcttgtcttggatacctga 115  Q
    |||||||||||||||||||| |||||| ||| | ||||||||||||| | | ||| ||||||||||||||||||||| |||||| | ||||  ||| |||    
T  10382706 tatgggcgtgggaggaggagttgttaggggaatctaggttgttattactaactgtggtgttgcaggttaatgttgatgatgtctggacttgattacttga 10382805  T
Q  116 tccagcagtaggctattcaattagaggggcttatcgca 153  Q
    ||||| ||| || ||| |  ||||||||||||| ||||    
T  10382806 tccaggagtggggtatacggttagaggggcttaccgca 10382843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 53
Target Start/End: Complemental strand, 19255918 - 19255883
Alignment:
Q  18 tgggcgtgggaggaggagatgttagtggagtgtagg 53  Q
    ||||||||||||||||||||||||||||||||||||    
T  19255918 tgggcgtgggaggaggagatgttagtggagtgtagg 19255883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 53
Target Start/End: Complemental strand, 33640196 - 33640161
Alignment:
Q  18 tgggcgtgggaggaggagatgttagtggagtgtagg 53  Q
    ||||||||||||||||||||||||||||||||||||    
T  33640196 tgggcgtgggaggaggagatgttagtggagtgtagg 33640161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 59
Target Start/End: Original strand, 900707 - 900757
Alignment:
Q  9 aggaggttatgggcgtgggaggaggagatgttagtggagtgtaggttgtta 59  Q
    |||||||| |||||||||||||| ||| |||||| ||||||||||||||||    
T  900707 aggaggttgtgggcgtgggaggatgagttgttagcggagtgtaggttgtta 900757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 53
Target Start/End: Original strand, 503396 - 503429
Alignment:
Q  20 ggcgtgggaggaggagatgttagtggagtgtagg 53  Q
    ||||||||||||||||||||||||||||||||||    
T  503396 ggcgtgggaggaggagatgttagtggagtgtagg 503429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 53
Target Start/End: Original strand, 5085888 - 5085923
Alignment:
Q  18 tgggcgtgggaggaggagatgttagtggagtgtagg 53  Q
    ||||||||||||||||||||||||| ||||||||||    
T  5085888 tgggcgtgggaggaggagatgttagaggagtgtagg 5085923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 9199098 - 9199149
Alignment:
Q  2 gtggagaaggaggttatgggcgtgggaggaggagatgttagtggagtgtagg 53  Q
    |||||| |||||||| ||||| ||||||||||||| ||||| ||||||||||    
T  9199098 gtggaggaggaggttgtgggcttgggaggaggagaagttagaggagtgtagg 9199149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 2 - 121
Target Start/End: Original strand, 17110985 - 17111104
Alignment:
Q  2 gtggagaaggaggttatgggcgtgggaggaggagatgttagtggagtgtaggttgttattattgattgttgtgttgcaggttaatgttgataatgtcttg 101  Q
    ||||||| | || ||||||||||||||||||||| || ||| |||||||| |   |||||||||| ||||  ||||||||||  |  | || |||| |||    
T  17110985 gtggagatgaagattatgggcgtgggaggaggagctggtagaggagtgtaagactttattattgactgtttcgttgcaggttggtagtcatgatgttttg 17111084  T
Q  102 tcttggatacctgatccagc 121  Q
    |||||| | |||||||||||    
T  17111085 tcttgggttcctgatccagc 17111104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 23 - 118
Target Start/End: Complemental strand, 30613982 - 30613887
Alignment:
Q  23 gtgggaggaggagatgttagtggagtgtaggttgttattattgattgttgtgttgcaggttaatgttgataatgtcttgtcttggatacctgatcc 118  Q
    ||||||||||||| || |||| || |||||||||||||||||   ||| ||||||||  || |||||||| |||||| |  |||||||| ||||||    
T  30613982 gtgggaggaggagttggtagtagaatgtaggttgttattattatatgtggtgttgcatattgatgttgatgatgtctggatttggatacgtgatcc 30613887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 2 - 53
Target Start/End: Complemental strand, 34180226 - 34180175
Alignment:
Q  2 gtggagaaggaggttatgggcgtgggaggaggagatgttagtggagtgtagg 53  Q
    |||||| | |||||| ||||||||||||||||||||  ||||||||||||||    
T  34180226 gtggaggatgaggttgtgggcgtgggaggaggagatagtagtggagtgtagg 34180175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 25350516 - 25350466
Alignment:
Q  3 tggagaaggaggttatgggcgtgggaggaggagatgttagtggagtgtagg 53  Q
    ||||| ||||||||||||||||||||||||||| || | | ||||||||||    
T  25350516 tggaggaggaggttatgggcgtgggaggaggagttggtggaggagtgtagg 25350466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 107
Target Start/End: Original strand, 3973646 - 3973715
Alignment:
Q  38 gttagtggagtgtaggttgttattattgattgttgtgttgcaggttaatgttgataatgtcttgtcttgg 107  Q
    ||||||||||| ||||||||| ||| | | |||||  |||||||||||| ||||| |||||| |||||||    
T  3973646 gttagtggagtataggttgttgttactaactgttgcattgcaggttaatattgatgatgtctagtcttgg 3973715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 4e-29; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 24 - 318
Target Start/End: Complemental strand, 25090888 - 25090599
Alignment:
Q  24 tgggaggaggagatgttagtggagtgtaggttgttattattgattgttgtgttgcaggttaatgttgataatgtcttgtcttggatacctgatccagcag 123  Q
    ||||||||||||||||||| ||||||||||||||||||| ||| ||||| | |||||| |||||||||| |||  | ||| |||||||||||||||| ||    
T  25090888 tgggaggaggagatgttagaggagtgtaggttgttattactgactgttgagctgcagggtaatgttgatgatgcatggtcctggatacctgatccaggag 25090789  T
Q  124 taggctattcaattagaggggcttatcgcatgcttacaggtgggacgacttccattcctactactctggtggtacatgcgtccctcctttggaggaaaga 223  Q
    | || ||| || ||| ||| || ||||  | ||||||||||||| ||  | |   ||||| || |     ||||| |||| | || ||||||||||||      
T  25090788 ttggttatacagttaaaggagcctatcttacgcttacaggtggggcggttactgctcctaataatgcttcggtacttgcgccacttctttggaggaaa-- 25090691  T
Q  224 tggatgttcctctaaaggtctctattttttggttgccgcctttttcggaacagattgcatatgaaggttaacttatttcgaagggggattattca 318  Q
      ||||| ||| |||| ||||||| |||||||||| |||||||||||||| ||||||| || ||  | ||| |||||||||||||||||||||||    
T  25090690 --gatgtccctttaaaagtctcta-tttttggttggcgcctttttcggaatagattgcctaagagagctaatttatttcgaagggggattattca 25090599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 30 - 108
Target Start/End: Complemental strand, 1073844 - 1073766
Alignment:
Q  30 gaggagatgttagtggagtgtaggttgttattattgattgttgtgttgcaggttaatgttgataatgtcttgtcttgga 108  Q
    |||||||| ||| ||||||||||| |||||||||||  |||||| |||||||||||||||||| |||||| ||||||||    
T  1073844 gaggagatattaatggagtgtaggatgttattattgtctgttgtattgcaggttaatgttgatgatgtctggtcttgga 1073766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 53
Target Start/End: Original strand, 25504855 - 25504890
Alignment:
Q  18 tgggcgtgggaggaggagatgttagtggagtgtagg 53  Q
    ||||||||||||||||||||||||||||||||||||    
T  25504855 tgggcgtgggaggaggagatgttagtggagtgtagg 25504890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 52470030 - 52470079
Alignment:
Q  4 ggagaaggaggttatgggcgtgggaggaggagatgttagtggagtgtagg 53  Q
    |||| |||||||| ||||||||||||||||||| | ||||||||||||||    
T  52470030 ggaggaggaggttgtgggcgtgggaggaggagaaggtagtggagtgtagg 52470079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 63
Target Start/End: Complemental strand, 39477422 - 39477382
Alignment:
Q  23 gtgggaggaggagatgttagtggagtgtaggttgttattat 63  Q
    |||||||||||||||||||| |||||||||||| |||||||    
T  39477422 gtgggaggaggagatgttagcggagtgtaggttattattat 39477382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 47106527 - 47106578
Alignment:
Q  2 gtggagaaggaggttatgggcgtgggaggaggagatgttagtggagtgtagg 53  Q
    |||||| |||||||||||||| ||||||||||||  ||||| ||||||||||    
T  47106527 gtggaggaggaggttatgggcttgggaggaggaggagttagaggagtgtagg 47106578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 52691765 - 52691715
Alignment:
Q  3 tggagaaggaggttatgggcgtgggaggaggagatgttagtggagtgtagg 53  Q
    ||||| ||||||||||||||||||||||||||| || | | ||||||||||    
T  52691765 tggaggaggaggttatgggcgtgggaggaggagttggtggaggagtgtagg 52691715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 9e-21; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 10 - 318
Target Start/End: Original strand, 16238740 - 16239043
Alignment:
Q  10 ggaggttatgggcgtgggaggaggagatgttagtggagtgtaggttgttattattgattgttgtgttgcaggttaatgttgataatgtcttgtcttggat 109  Q
    |||||||| | || |||||||||||  |||||| ||| ||||||||||||||| |||  ||| |||||||| ||||||||||| |||||| |||||||||    
T  16238740 ggaggttacgagcttgggaggaggaattgttagaggaatgtaggttgttattactgaccgttatgttgcagattaatgttgatgatgtctggtcttggat 16238839  T
Q  110 acctgatccagcagtaggctattcaattagaggggcttatcgcatgcttacaggtgggacgacttccattcctactactctggtggtacatgcgtccctc 209  Q
     ||||||||  |||| || ||  |  ||| | |||||||||||| ||||||| |||||| |    |  || ||||| ||   | ||| | |||| | |||    
T  16238840 tcctgatccttcagttgggtacactgttaaacgggcttatcgcacgcttacatgtgggatggaacctgtttctacttcttcaggggttcttgcgcctctc 16238939  T
Q  210 ctttggaggaaagatggatgttcctctaaaggtctctattttttggttgccgcctttttcggaacagattgcatatgaaggttaacttatttcgaagggg 309  Q
     |||||||||||     |||||||||||||||| ||   |||||||||| ||||| |||||||| ||||||| |||||||| ||| |||||| || ||||    
T  16238940 atttggaggaaa----aatgttcctctaaaggtatc-cctttttggttggcgcctctttcggaatagattgcctatgaaggctaatttatttagacgggg 16239034  T
Q  310 gattattca 318  Q
    ||| |||||    
T  16239035 gatcattca 16239043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 25132398 - 25132318
Alignment:
Q  3 tggagaaggaggttatgggcgtgggaggaggagatgttagtggagtgtaggttgttattattgattgttgtgttgcaggtt 83  Q
    |||||||||||||| |||| ||||||||||||| |  ||| ||||||||||||||||||| |||  || || |||||||||    
T  25132398 tggagaaggaggttgtgggtgtgggaggaggagttactaggggagtgtaggttgttattactgacggtggttttgcaggtt 25132318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 120
Target Start/End: Original strand, 16785428 - 16785543
Alignment:
Q  2 gtggagaaggaggttatgggcgtgggaggaggagatgttagtggagtgtaggttgttattattgattgttgtgttgcaggttaatgttgataatgtcttg 101  Q
    ||||||||||||||||||||| |||||||||  | ||   |||||||||||| |||||||||||  | || || ||||| || |||||||| || ||| |    
T  16785428 gtggagaaggaggttatgggcttgggaggagttggtg---gtggagtgtaggatgttattattgtctattatgctgcagattgatgttgatgatatctgg 16785524  T
Q  102 tcttggatacctgatccag 120  Q
    ||||||   ||||||||||    
T  16785525 tcttggtctcctgatccag 16785543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 22734565 - 22734625
Alignment:
Q  3 tggagaaggaggttatgggcgtgggaggaggagatgttagtggagtgtaggttgttattat 63  Q
    ||||| |||||||| | || ||||||| |||||||||||| |||||||||||| |||||||    
T  22734565 tggaggaggaggttgttggtgtgggagaaggagatgttagcggagtgtaggttattattat 22734625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 59
Target Start/End: Complemental strand, 17620344 - 17620287
Alignment:
Q  2 gtggagaaggaggttatgggcgtgggaggaggagatgttagtggagtgtaggttgtta 59  Q
    |||||| |||||||| |||||||||||| ||||| || |||  |||||||||||||||    
T  17620344 gtggaggaggaggttgtgggcgtgggagaaggagttggtagcagagtgtaggttgtta 17620287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 63
Target Start/End: Complemental strand, 30435339 - 30435286
Alignment:
Q  10 ggaggttatgggcgtgggaggaggagatgttagtggagtgtaggttgttattat 63  Q
    ||||||| |||| ||||||||||||| |||||| |||||||||| |||| ||||    
T  30435339 ggaggttgtgggagtgggaggaggagctgttaggggagtgtaggctgttgttat 30435286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 52250970 - 52251019
Alignment:
Q  2 gtggagaaggaggttatgggcgtgggaggaggagatgttagtggagtgta 51  Q
    |||||||||| |||| |||| |||||||||||||||| ||| ||||||||    
T  52250970 gtggagaagggggttgtgggtgtgggaggaggagatgctaggggagtgta 52251019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 7163793 - 7163745
Alignment:
Q  3 tggagaaggaggttatgggcgtgggaggaggagatgttagtggagtgta 51  Q
    ||||||||| |||| |||| |||||||||||||||| ||| ||||||||    
T  7163793 tggagaaggcggttgtgggtgtgggaggaggagatgctaggggagtgta 7163745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 52
Target Start/End: Complemental strand, 28308760 - 28308720
Alignment:
Q  12 aggttatgggcgtgggaggaggagatgttagtggagtgtag 52  Q
    ||||| |||||||||||||||||||| |||| |||||||||    
T  28308760 aggttgtgggcgtgggaggaggagatcttaggggagtgtag 28308720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 9e-18; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 2 - 116
Target Start/End: Complemental strand, 9084344 - 9084230
Alignment:
Q  2 gtggagaaggaggttatgggcgtgggaggaggagatgttagtggagtgtaggttgttattattgattgttgtgttgcaggttaatgttgataatgtcttg 101  Q
    |||||||||| | ||  |||| ||||||||||||  ||||||||||||||  ||||| ||| | ||||||||||||||||||||| || || ||||||||    
T  9084344 gtggagaaggggattgagggcctgggaggaggagcagttagtggagtgtacattgttgttactaattgttgtgttgcaggttaatattaatgatgtcttg 9084245  T
Q  102 tcttggatacctgat 116  Q
    | |||||| ||||||    
T  9084244 tattggattcctgat 9084230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 27544459 - 27544510
Alignment:
Q  2 gtggagaaggaggttatgggcgtgggaggaggagatgttagtggagtgtagg 53  Q
    ||||||||||||  ||||||||||||||||||| ||| ||||||||||||||    
T  27544459 gtggagaaggagactatgggcgtgggaggaggaaatggtagtggagtgtagg 27544510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 53
Target Start/End: Complemental strand, 45992854 - 45992819
Alignment:
Q  18 tgggcgtgggaggaggagatgttagtggagtgtagg 53  Q
    ||||||||||||||||||||||||||||||||||||    
T  45992854 tgggcgtgggaggaggagatgttagtggagtgtagg 45992819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 11339033 - 11338984
Alignment:
Q  10 ggaggttatgggcgtgggaggaggagatgttagtggagtgtaggttgtta 59  Q
    ||||||| ||||||||||||||||| ||| ||| ||||||||||||||||    
T  11339033 ggaggttgtgggcgtgggaggaggaaatggtagaggagtgtaggttgtta 11338984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 28173822 - 28173879
Alignment:
Q  2 gtggagaaggaggttatgggcgtgggaggaggagatgttagtggagtgtaggttgtta 59  Q
    |||||| ||||| || |||||||||||||||||| || ||| ||||||||||||||||    
T  28173822 gtggaggaggagattgtgggcgtgggaggaggagttggtagcggagtgtaggttgtta 28173879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 53
Target Start/End: Complemental strand, 25924348 - 25924313
Alignment:
Q  18 tgggcgtgggaggaggagatgttagtggagtgtagg 53  Q
    |||||||||||||||||| |||||||||||||||||    
T  25924348 tgggcgtgggaggaggagttgttagtggagtgtagg 25924313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 5865385 - 5865344
Alignment:
Q  18 tgggcgtgggaggaggagatgttagtggagtgtaggttgtta 59  Q
    |||||||| ||||||||| |||||| ||||||||||||||||    
T  5865385 tgggcgtgagaggaggagttgttagcggagtgtaggttgtta 5865344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 22819570 - 22819614
Alignment:
Q  9 aggaggttatgggcgtgggaggaggagatgttagtggagtgtagg 53  Q
    |||||||| ||||| |||||||||||| |||||| ||||||||||    
T  22819570 aggaggttgtgggcctgggaggaggagttgttaggggagtgtagg 22819614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 30573189 - 30573237
Alignment:
Q  3 tggagaaggaggttatgggcgtgggaggaggagatgttagtggagtgta 51  Q
    ||||| |||||||| |||| |||||||||||||||| ||| ||||||||    
T  30573189 tggaggaggaggttgtgggtgtgggaggaggagatgctaggggagtgta 30573237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 2 - 59
Target Start/End: Complemental strand, 23923143 - 23923086
Alignment:
Q  2 gtggagaaggaggttatgggcgtgggaggaggagatgttagtggagtgtaggttgtta 59  Q
    |||||| |||||||| |||| |||||||||||||||||||| ||||||||||||||||    
T  23923143 gtggaggaggaggttgtgggtgtgggaggaggagatgttagcggagtgtaggttgtta 23923086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 7003504 - 7003456
Alignment:
Q  3 tggagaaggaggttatgggcgtgggaggaggagatgttagtggagtgta 51  Q
    ||||||||||||||||||| ||| |||||||||||||||| ||||||||    
T  7003504 tggagaaggaggttatgggtgtgagaggaggagatgttagaggagtgta 7003456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 18891752 - 18891804
Alignment:
Q  3 tggagaaggaggttatgggcgtgggaggaggagatgttagtggagtgtaggtt 55  Q
    ||||| |||||||| |||| | |||||||||||| ||||||||||||||||||    
T  18891752 tggaggaggaggttgtgggtgggggaggaggagaagttagtggagtgtaggtt 18891804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 53
Target Start/End: Original strand, 11574556 - 11574591
Alignment:
Q  18 tgggcgtgggaggaggagatgttagtggagtgtagg 53  Q
    ||||||||||||||||||||||||| ||||||||||    
T  11574556 tgggcgtgggaggaggagatgttagaggagtgtagg 11574591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 34338176 - 34338130
Alignment:
Q  3 tggagaaggaggttatgggcgtgggaggaggagatgttagtggagtg 49  Q
    ||||| |||||||| |||| |||||||||||||||| ||||||||||    
T  34338176 tggaggaggaggttgtgggtgtgggaggaggagatggtagtggagtg 34338130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 53
Target Start/End: Original strand, 4987927 - 4987962
Alignment:
Q  18 tgggcgtgggaggaggagatgttagtggagtgtagg 53  Q
    ||||||||||||||||||||||||||||||||||||    
T  4987927 tgggcgtgggaggaggagatgttagtggagtgtagg 4987962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 53
Target Start/End: Original strand, 12243587 - 12243620
Alignment:
Q  20 ggcgtgggaggaggagatgttagtggagtgtagg 53  Q
    ||||||||||||||||||||||||||||||||||    
T  12243587 ggcgtgggaggaggagatgttagtggagtgtagg 12243620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 5584987 - 5584927
Alignment:
Q  3 tggagaaggaggttatgggcgtgggaggaggagatgttagtggagtgtaggttgttattat 63  Q
    ||||| |||||||| | || ||||||| |||||||||||| |||||||||||| |||||||    
T  5584987 tggaggaggaggttgttggtgtgggagaaggagatgttagcggagtgtaggttattattat 5584927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 30926716 - 30926768
Alignment:
Q  2 gtggagaaggaggttatgggcgtgggaggaggagatgttagtggagtgtaggt 54  Q
    ||||||| |||| |||||||||||||||||||||||| ||| ||| |||||||    
T  30926716 gtggagacggagattatgggcgtgggaggaggagatgatagaggaatgtaggt 30926768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 53
Target Start/End: Original strand, 19384577 - 19384607
Alignment:
Q  23 gtgggaggaggagatgttagtggagtgtagg 53  Q
    |||||||||||||||||||||||||||||||    
T  19384577 gtgggaggaggagatgttagtggagtgtagg 19384607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 35029516 - 35029467
Alignment:
Q  2 gtggagaaggaggttatgggcgtgggaggaggagatgttagtggagtgta 51  Q
    |||||| ||| |||| |||| |||||||||||||||||||| ||||||||    
T  35029516 gtggaggagggggttgtgggtgtgggaggaggagatgttaggggagtgta 35029467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 53
Target Start/End: Complemental strand, 19647987 - 19647952
Alignment:
Q  18 tgggcgtgggaggaggagatgttagtggagtgtagg 53  Q
    ||||||||||||||||||||||||||||||||||||    
T  19647987 tgggcgtgggaggaggagatgttagtggagtgtagg 19647952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 20544361 - 20544325
Alignment:
Q  19 gggcgtgggaggaggagatgttagtggagtgtaggtt 55  Q
    |||||||||||||||||||||||| ||||||||||||    
T  20544361 gggcgtgggaggaggagatgttagaggagtgtaggtt 20544325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 53
Target Start/End: Complemental strand, 8935353 - 8935318
Alignment:
Q  18 tgggcgtgggaggaggagatgttagtggagtgtagg 53  Q
    ||||||||||||||||||||||||| ||||||||||    
T  8935353 tgggcgtgggaggaggagatgttagaggagtgtagg 8935318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 53
Target Start/End: Original strand, 49926128 - 49926163
Alignment:
Q  18 tgggcgtgggaggaggagatgttagtggagtgtagg 53  Q
    |||||||||||||||||| |||||||||||||||||    
T  49926128 tgggcgtgggaggaggagttgttagtggagtgtagg 49926163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 11773356 - 11773393
Alignment:
Q  15 ttatgggcgtgggaggaggagatgttagtggagtgtag 52  Q
    |||||||||||||||||||| ||| |||||||||||||    
T  11773356 ttatgggcgtgggaggaggaaatggtagtggagtgtag 11773393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 28713164 - 28713221
Alignment:
Q  2 gtggagaaggaggttatgggcgtgggaggaggagatgttagtggagtgtaggttgtta 59  Q
    |||||| |||||| | |||||||||||||||||| || |||  |||||||||||||||    
T  28713164 gtggaggaggaggctgtgggcgtgggaggaggagttggtagcagagtgtaggttgtta 28713221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 51
Target Start/End: Original strand, 7663106 - 7663134
Alignment:
Q  23 gtgggaggaggagatgttagtggagtgta 51  Q
    |||||||||||||||||||||||||||||    
T  7663106 gtgggaggaggagatgttagtggagtgta 7663134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 20395891 - 20395839
Alignment:
Q  1 tgtggagaaggaggttatgggcgtgggaggaggagatgttagtggagtgtagg 53  Q
    ||||||| |||||||| ||||| ||||||||||||  ||||| ||||||||||    
T  20395891 tgtggaggaggaggttgtgggcttgggaggaggaggagttagaggagtgtagg 20395839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 58
Target Start/End: Original strand, 43689099 - 43689147
Alignment:
Q  10 ggaggttatgggcgtgggaggaggagatgttagtggagtgtaggttgtt 58  Q
    ||||||| |||| |||||||||||||||||||  |||||||||||||||    
T  43689099 ggaggttgtgggagtgggaggaggagatgttacgggagtgtaggttgtt 43689147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 2 - 53
Target Start/End: Complemental strand, 31093547 - 31093496
Alignment:
Q  2 gtggagaaggaggttatgggcgtgggaggaggagatgttagtggagtgtagg 53  Q
    |||||||||||||||||||||||||||||| ||| |  ||| ||||||||||    
T  31093547 gtggagaaggaggttatgggcgtgggaggatgagttagtagaggagtgtagg 31093496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 53
Target Start/End: Original strand, 21517683 - 21517725
Alignment:
Q  11 gaggttatgggcgtgggaggaggagatgttagtggagtgtagg 53  Q
    |||||| |||||||||||||||||| ||||||| |||||||||    
T  21517683 gaggttgtgggcgtgggaggaggagttgttagtagagtgtagg 21517725  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 53
Target Start/End: Complemental strand, 12525217 - 12525184
Alignment:
Q  20 ggcgtgggaggaggagatgttagtggagtgtagg 53  Q
    |||||||||||||||| |||||||||||||||||    
T  12525217 ggcgtgggaggaggagttgttagtggagtgtagg 12525184  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 22725287 - 22725331
Alignment:
Q  9 aggaggttatgggcgtgggaggaggagatgttagtggagtgtagg 53  Q
    ||||| |||||||  ||||||||||||||||||| ||||||||||    
T  22725287 aggagattatgggtttgggaggaggagatgttagaggagtgtagg 22725331  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 43310552 - 43310504
Alignment:
Q  3 tggagaaggaggttatgggcgtgggaggaggagatgttagtggagtgta 51  Q
    ||||||||| |||| |||| |||||||||||||||| ||| ||||||||    
T  43310552 tggagaagggggttgtgggtgtgggaggaggagatgctaggggagtgta 43310504  T

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Target: scaffold0418 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0418
Description:

Target: scaffold0418; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 51
Target Start/End: Complemental strand, 7948 - 7920
Alignment:
Q  23 gtgggaggaggagatgttagtggagtgta 51  Q
    |||||||||||||||||||||||||||||    
T  7948 gtgggaggaggagatgttagtggagtgta 7920  T

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Target: scaffold0016 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 28075 - 28027
Alignment:
Q  3 tggagaaggaggttatgggcgtgggaggaggagatgttagtggagtgta 51  Q
    ||||||||| |||| |||| |||||||||||||||| ||| ||||||||    
T  28075 tggagaagggggttgtgggtgtgggaggaggagatgctaggggagtgta 28027  T

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Target: scaffold0007 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 182424 - 182372
Alignment:
Q  1 tgtggagaaggaggttatgggcgtgggaggaggagatgttagtggagtgtagg 53  Q
    ||||||| |||||||| ||||| ||||||||||||  ||||| ||||||||||    
T  182424 tgtggaggaggaggttgtgggcttgggaggaggaggagttagaggagtgtagg 182372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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