View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6875A_low_60 (Length: 348)
Name: NF6875A_low_60
Description: NF6875A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6875A_low_60 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 5 - 297
Target Start/End: Original strand, 26017009 - 26017303
Alignment:
| Q |
5 |
cagtaccatctccgtcggcagcgaaggatgttgttgaggtagaaggagatgggttttctgtgtattgtaagagaggaagcaggaagcatatggaggatcg |
104 |
Q |
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| T |
26017009 |
cagtaccatctcggtcggcagcgaaggatgttgttgaggtagaaggagatgggttttctgtgtattgtaagagaggaagcaggaagcatatggaggatcg |
26017108 |
T |
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| Q |
105 |
ttactctgcttctcttgatcttcatggacaatctaaacaggtaacttcatgggttgcatggatttgttcatc--nnnnnnnnnnnnnnnatactatatag |
202 |
Q |
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| T |
26017109 |
ttactctgcttctcttgatcttcatggacaatctaaacaggtaacttcatgggttgcatggatttgttcatctttttttttttttttttatactatatag |
26017208 |
T |
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| Q |
203 |
atttattaaacaaatttggaaaggtcttattgaatttatggttaatgggatttacaaaatggatgcatgttcaaggaccaatatatattctaaga |
297 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||| |
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| T |
26017209 |
atttattaaacaaatttggaaaggtcttattaaatttatggttaatgggatttacaaaatggatacatgtgtaaggaccaatatatagtctaaga |
26017303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 25 - 153
Target Start/End: Original strand, 26001986 - 26002114
Alignment:
| Q |
25 |
gcgaaggatgttgttgaggtagaaggagatgggttttctgtgtattgtaagagaggaagcaggaagcatatggaggatcgttactctgcttctcttgatc |
124 |
Q |
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| T |
26001986 |
gcgaaggatgttgttgaggtggagggagatggattttctgtgtattgtaagaaaggaggtagaaaacatatggaggatcgttattctgcttctgttgatc |
26002085 |
T |
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| Q |
125 |
ttcatggacaatctaaacaggtaacttca |
153 |
Q |
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| T |
26002086 |
ttcatggtgaatcaaaacaggtaacttca |
26002114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 25 - 107
Target Start/End: Original strand, 30373225 - 30373307
Alignment:
| Q |
25 |
gcgaaggatgttgttgaggtagaaggagatgggttttctgtgtattgtaagagaggaagcaggaagcatatggaggatcgtta |
107 |
Q |
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|||| |||||||||||||| || |||||||||| |||||| |||||||||||||| || ||| || ||||||| |||||||| |
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| T |
30373225 |
gcgagggatgttgttgaggcggagggagatgggtattctgtttattgtaagagagggaggagggagtatatggaagatcgtta |
30373307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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