View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6875A_low_61 (Length: 344)
Name: NF6875A_low_61
Description: NF6875A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6875A_low_61 |
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| [»] chr6 (7 HSPs) |
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| [»] scaffold0525 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 288; Significance: 1e-161; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 17 - 344
Target Start/End: Original strand, 7140051 - 7140378
Alignment:
| Q |
17 |
atcaatgaagtctttgcagattggaacaaacttattacaactatagttgcatgtttaacagaagatagattgctcttgctcccacagagttgctggactg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
7140051 |
atcaatgaagtctttgcagattggaacaaacttattacaactatagttgcatgtttaacagaagatagattgctcttgctcccacagagttgctggacag |
7140150 |
T |
|
| Q |
117 |
ggggaatacccttatacacgaaggtacagagatttggagtgtataactcgaacttgcaataacctaatgccgaggagctgtagtctattgttaaattggt |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |
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| T |
7140151 |
ggggaatacccttatacacgaaggtacagagatttggagtgtataactcgaacttgcaataacctaatgcccaggagccgtagtctattgttaaattggt |
7140250 |
T |
|
| Q |
217 |
aagcgtggcacttgatatgcataggttttgtttgttaaaagagcaacaattttgaagaatcaaactattcaacctcttaaatgctgaaaaaggctcaaca |
316 |
Q |
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|||||||||||||||||||| ||||||||||||| || | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7140251 |
gagcgtggcacttgatatgcaaaggttttgtttgtcaagggtgcgacaattttgaagaatcaaactattcaacctcttaaatgctgaaaaaggctcaaca |
7140350 |
T |
|
| Q |
317 |
cggccatcatcgtccacaccaaagtcaa |
344 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
7140351 |
cggccatcatcgtccacaccaaagtcaa |
7140378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 42 - 344
Target Start/End: Original strand, 8655991 - 8656293
Alignment:
| Q |
42 |
acaaacttattacaactatagttgcatgtttaacagaagatagattgctcttgctcccacagagttgctggactgggggaatacccttatacacgaaggt |
141 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
8655991 |
acaaacttattacaactatagttgcatgtttaacagaagatagattgctcttgctcccacagagttgctggacagggggaatacccttatacacgaaggt |
8656090 |
T |
|
| Q |
142 |
acagagatttggagtgtataactcgaacttgcaataacctaatgccgaggagctgtagtctattgttaaattggtaagcgtggcacttgatatgcatagg |
241 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| || ||||||||||||||||| ||| |
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| T |
8656091 |
acagagatttggagtgtataactcgaacttgcaataacctaatgcccaggagtcgtagtctattgttaaattggtgagtgtggcacttgatatgcagagg |
8656190 |
T |
|
| Q |
242 |
ttttgtttgttaaaagagcaacaattttgaagaatcaaactattcaacctcttaaatgctgaaaaaggctcaacacggccatcatcgtccacaccaaagt |
341 |
Q |
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|||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8656191 |
ttttgtttgtcaagagagcgacaattttgaagaatcaaactattcaacctcttaaatgctgaaaaaggctcaacacggccatcatcgtccacaccaaagt |
8656290 |
T |
|
| Q |
342 |
caa |
344 |
Q |
| |
|
||| |
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| T |
8656291 |
caa |
8656293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 17 - 344
Target Start/End: Original strand, 8679662 - 8679989
Alignment:
| Q |
17 |
atcaatgaagtctttgcagattggaacaaacttattacaactatagttgcatgtttaacagaagatagattgctcttgctcccacagagttgctggactg |
116 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
8679662 |
atcaatgcagtctttgcagattggaacaaacttattacaactatagttgcatgtttaacagaagatagattgctcttgctcccacagagttgctggacag |
8679761 |
T |
|
| Q |
117 |
ggggaatacccttatacacgaaggtacagagatttggagtgtataactcgaacttgcaataacctaa-tgccgaggagctgtagtctattgttaaattgg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||| |||| |||||| ||||||||||||||||||| |
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| T |
8679762 |
agggaatacccttatacacgaaggtacagagatttggagtgcataactcgaacttgtaatagcctaactgcc-aggagccatagtctattgttaaattgg |
8679860 |
T |
|
| Q |
216 |
taagcgtggcacttgatatgcataggttttgtttgttaaaagagcaacaattttgaagaatcaaactattcaacctcttaaatgctgaaaaaggctcaac |
315 |
Q |
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| ||||||||||| |||||||| ||||||| ||| | || | |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |
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| T |
8679861 |
tgagcgtggcactcgatatgcaaaggttttatttatcaagaacgcaacaattttgaacaatcaagctattcaacctcttaaatgctgaaaaaggctcaac |
8679960 |
T |
|
| Q |
316 |
acggccatcatcgtccacaccaaagtcaa |
344 |
Q |
| |
|
|||||||| |||||||||||||||||||| |
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| T |
8679961 |
acggccattatcgtccacaccaaagtcaa |
8679989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 66 - 174
Target Start/End: Original strand, 7114910 - 7115018
Alignment:
| Q |
66 |
catgtttaacagaagatagattgctcttgctcccacagagttgctggactgggggaatacccttatacacgaaggtacagagatttggagtgtataactc |
165 |
Q |
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||||||| || ||||| ||||| |||||||||||||||||||| || || | ||||| ||||| || || |||||||| ||| |||||||||||||||| |
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| T |
7114910 |
catgtttgactgaagagagattactcttgctcccacagagttgttgaacagtaggaatgcccttgtaaacaaaggtacatagacttggagtgtataactc |
7115009 |
T |
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| Q |
166 |
gaacttgca |
174 |
Q |
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|| ||||| |
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| T |
7115010 |
caagttgca |
7115018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 66 - 174
Target Start/End: Original strand, 7119982 - 7120090
Alignment:
| Q |
66 |
catgtttaacagaagatagattgctcttgctcccacagagttgctggactgggggaatacccttatacacgaaggtacagagatttggagtgtataactc |
165 |
Q |
| |
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||||||| || ||||| ||||| |||||||||||||||||||| || || | ||||| ||||| || || |||||||| ||| |||||||||||||||| |
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| T |
7119982 |
catgtttgactgaagagagattactcttgctcccacagagttgttgaacagtaggaatgcccttgtaaacaaaggtacatagacttggagtgtataactc |
7120081 |
T |
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| Q |
166 |
gaacttgca |
174 |
Q |
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|| ||||| |
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| T |
7120082 |
caagttgca |
7120090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 66 - 174
Target Start/End: Original strand, 7123386 - 7123494
Alignment:
| Q |
66 |
catgtttaacagaagatagattgctcttgctcccacagagttgctggactgggggaatacccttatacacgaaggtacagagatttggagtgtataactc |
165 |
Q |
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||||||| || ||||| ||||| |||||||||||||||||||| || || | ||||| ||||| || || |||||||| ||| |||||||||||||||| |
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| T |
7123386 |
catgtttgactgaagagagattactcttgctcccacagagttgttgaacagtaggaatgcccttgtaaacaaaggtacatagacttggagtgtataactc |
7123485 |
T |
|
| Q |
166 |
gaacttgca |
174 |
Q |
| |
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|| ||||| |
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| T |
7123486 |
caagttgca |
7123494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 328
Target Start/End: Original strand, 7174960 - 7175012
Alignment:
| Q |
276 |
tcaaactattcaacctcttaaatgctgaaaaaggctcaacacggccatcatcg |
328 |
Q |
| |
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|||||||||||||||| |||||| || |||||||| ||||||||||||||| |
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| T |
7174960 |
tcaaactattcaacctgttaaataatgtaaaaggcttgacacggccatcatcg |
7175012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 327
Target Start/End: Original strand, 14288487 - 14288539
Alignment:
| Q |
275 |
atcaaactattcaacctcttaaatgctgaaaaaggctcaacacggccatcatc |
327 |
Q |
| |
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|||||| |||||||| | ||| ||| ||||||||||||||||||||||||||| |
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| T |
14288487 |
atcaaagtattcaacttgttacatgatgaaaaaggctcaacacggccatcatc |
14288539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0525 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0525
Description:
Target: scaffold0525; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 17 - 48
Target Start/End: Original strand, 1997 - 2028
Alignment:
| Q |
17 |
atcaatgaagtctttgcagattggaacaaact |
48 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
1997 |
atcaatgaagtctttgcagattggaacaaact |
2028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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