View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6875A_low_65 (Length: 341)
Name: NF6875A_low_65
Description: NF6875A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6875A_low_65 |
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Alignment Details
Target: chr6 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 14 - 324
Target Start/End: Complemental strand, 524603 - 524294
Alignment:
| Q |
14 |
accatggatgtcacgtttatggaatctgaatatttctattcctcttcactcatatccaattctcctcttcagggggagttacaagatgaagagcaaaact |
113 |
Q |
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| T |
524603 |
accatggatgtcacgtttgtggaatctgaatatttctattcctcttcacccatatccaattctcctcttcagggggagttacaagatgaagagcaaaatt |
524504 |
T |
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| Q |
114 |
gggtaaatttggcaccatatgaagctgaccctatacatgaagaaatgaggtcggatgtgcctgcttttgaatttgttgaacctgaacttatgatgactga |
213 |
Q |
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| T |
524503 |
gggtaaatttgccaccatatgaagctgaccctatacatgaagaaatgaggtcggatgtgcctgcttttgaatctgttgaacctgaacttatgatgactga |
524404 |
T |
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| Q |
214 |
tgaagagcagagaaaagtgaatgattgtagtgcgacacaagttgttgaaccagaagctgaaattgaaaatgattcaaatcatcannnnnnntcacttctt |
313 |
Q |
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| T |
524403 |
tgaagagcagagaaaagtgaaggattgtagtgcgacacaagttgttgaaccagaagctgaaattgaaaatgagtcaaattatca-cccccctcacttctt |
524305 |
T |
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| Q |
314 |
agtacatgatg |
324 |
Q |
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| T |
524304 |
agtacatgatg |
524294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 10 - 324
Target Start/End: Original strand, 22856498 - 22856807
Alignment:
| Q |
10 |
catcaccatggatgtcacgtttatggaatctgaatatttctattcctcttcactcatatccaattctcctcttcagggggagttacaagatgaagagcaa |
109 |
Q |
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| T |
22856498 |
catcaccatggatgtcacatttgtggaatctgaatatttctattccttttcacccatatctaattctcctcttcaaggggagttacaagatgaagagcaa |
22856597 |
T |
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| Q |
110 |
aactgggtaaatttggcaccatatgaagctgaccctatacatgaagaaatgaggtcggatgtgcctgcttttgaatttgttgaacctgaacttatgatga |
209 |
Q |
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| T |
22856598 |
aattgggtaaatttgccaccatatgaagatgaccctatacatgaagaagtgaggttggctgtgcatacttttgaatctgttgaacctgaccttatgatga |
22856697 |
T |
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| Q |
210 |
ctgatgaagagcagagaaaagtgaatgattgtagtgcgacacaagttgttgaaccagaagctgaaattgaaaatgattcaaatcatcannnnnnntcact |
309 |
Q |
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| T |
22856698 |
ctgatgaagagcagagaaaagtgaatgattgtagtgcgacacaagttgttgaactagaagctgaaattgaaaataagtcaaatcatca-----actcact |
22856792 |
T |
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| Q |
310 |
tcttagtacatgatg |
324 |
Q |
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| T |
22856793 |
tcttagtacatgatg |
22856807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 10 - 297
Target Start/End: Complemental strand, 10673127 - 10672849
Alignment:
| Q |
10 |
catcaccatggatgtcacgtttatggaatctgaatatttctattcctcttcactcatatccaattctcctcttcagggggagttacaagatgaagagcaa |
109 |
Q |
| |
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||||||||||||||||| |||| |||||||||| ||||| | ||||||| ||| ||||||||||| | ||||||||||||||||| |||||| |||| || |
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| T |
10673127 |
catcaccatggatgtcatgtttgtggaatctgagtatttattttcctctacacacatatccaatttttctcttcagggggagttataagatgtagagaaa |
10673028 |
T |
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| Q |
110 |
aactgggtaaatttggcaccatatgaagctgaccctatacatgaagaaatgaggtcggatgtgcctgcttttgaatttgttgaacctgaacttatgatga |
209 |
Q |
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|| |||||||||||| |||||||||||||||| |||| ||||||||| |||| |||| || ||||| ||||||||| | |||||||||| |
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| T |
10673027 |
aattgggtaaatttgccaccatatgaagctgattctat---------aatgaggtcagatgggcctatttgtgaatctgttgaaccaaatcttatgatga |
10672937 |
T |
|
| Q |
210 |
ctgatgaagagcagagaaaagtgaatgattgtagtgcgacacaagttgttgaaccagaagctgaaattgaaaatgattcaaatcatca |
297 |
Q |
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|||||||||||||||||||| |||||||||| ||||||||||||||||| ||||| ||| ||||||||||||| | ||||||||||| |
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| T |
10672936 |
ctgatgaagagcagagaaaaaggaatgattgttgtgcgacacaagttgtttaaccaaaagttgaaattgaaaataagtcaaatcatca |
10672849 |
T |
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