View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6875A_low_7 (Length: 473)

Name: NF6875A_low_7
Description: NF6875A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6875A_low_7
NF6875A_low_7
[»] chr2 (18 HSPs)
chr2 (162-331)||(44624829-44624998)
chr2 (182-331)||(44615456-44615605)
chr2 (171-331)||(39153106-39153266)
chr2 (195-323)||(39472763-39472891)
chr2 (171-326)||(39387469-39387624)
chr2 (195-331)||(39138693-39138826)
chr2 (198-331)||(39371164-39371297)
chr2 (171-331)||(39216704-39216864)
chr2 (171-331)||(39396627-39396787)
chr2 (196-325)||(39205742-39205871)
chr2 (171-326)||(39196485-39196640)
chr2 (171-326)||(39413004-39413159)
chr2 (203-325)||(44895114-44895236)
chr2 (198-331)||(39380496-39380629)
chr2 (196-322)||(39478294-39478420)
chr2 (171-326)||(39421161-39421313)
chr2 (196-325)||(39223764-39223893)
chr2 (180-299)||(39188738-39188857)
[»] chr8 (3 HSPs)
chr8 (195-331)||(44730162-44730298)
chr8 (170-331)||(44949869-44950030)
chr8 (173-331)||(45343012-45343170)
[»] chr5 (2 HSPs)
chr5 (170-326)||(17060698-17060854)
chr5 (171-326)||(33562341-33562496)
[»] scaffold0283 (1 HSPs)
scaffold0283 (170-331)||(5849-6010)
[»] chr7 (1 HSPs)
chr7 (195-331)||(19808950-19809083)
[»] chr6 (1 HSPs)
chr6 (268-325)||(16114420-16114477)


Alignment Details
Target: chr2 (Bit Score: 158; Significance: 7e-84; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 162 - 331
Target Start/End: Complemental strand, 44624998 - 44624829
Alignment:
Q  162 cttgtatccagcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacc 261  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44624998 cttgtatccagcaacagatccaaaaagcttttagacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacc 44624899  T
Q  262 tccaaagaattttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctc 331  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44624898 tccaaataattttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctc 44624829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 182 - 331
Target Start/End: Complemental strand, 44615605 - 44615456
Alignment:
Q  182 caaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtatt 281  Q
    |||||| ||| | |||||||||||||||||| ||| ||  |||||| |||||||| ||||||||||||||||| ||| |||||||||||||||| |||||    
T  44615605 caaaaatcttgaagacttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaattttcggtatt 44615506  T
Q  282 ttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctc 331  Q
    |||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  44615505 ttctttcatgttagctttcaactcacacgctagcttcaacgcttcatctc 44615456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 171 - 331
Target Start/End: Complemental strand, 39153266 - 39153106
Alignment:
Q  171 agcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaa 270  Q
    ||||||| || |||||||||  | ||||||||||| ||| ||| |||||  |||||||||||||||||||| || |||||| || |||||| ||||||||    
T  39153266 agcaacaaatgcaaaaagctccaagacttcatctttatcgaaagaagtaaccaatccataaatcgacaaaaccagtagaaaaccaagaaccaccaaagaa 39153167  T
Q  271 ttttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctc 331  Q
    ||||||||||||||||| || ||||||||||| ||| | || || ||||||||||| ||||    
T  39153166 ttttcagtattttcttttattttagctttcaaatcatgtgcgagtttcaatgcttcttctc 39153106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 195 - 323
Target Start/End: Original strand, 39472763 - 39472891
Alignment:
Q  195 gacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgtta 294  Q
    ||||||||||||||||||| ||||| ||||| ||||||| ||||||| || |||||| || |||||  ||||||||||||||||||||||||||||||||    
T  39472763 gacttcatcttcatcaaaagaagtaagcaattcataaattgacaaaagcagtagaaaaccaagaactaccaaagaattttcagtattttctttcatgtta 39472862  T
Q  295 gctttcaactcacgcgctagcttcaatgc 323  Q
     ||||||| ||| | || |||||||||||    
T  39472863 actttcaaatcaagtgcgagcttcaatgc 39472891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 171 - 326
Target Start/End: Original strand, 39387469 - 39387624
Alignment:
Q  171 agcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaa 270  Q
    ||||||| || |||||||||  |  ||||||||||| |||||||||  | |||  |||||||| ||||||| ||  ||||| || |||||  ||||||||    
T  39387469 agcaacaaatgcaaaaagctccaaaacttcatcttcgtcaaaataatcaagcagcccataaattgacaaaagcagcagaaaaccaagaacggccaaagaa 39387568  T
Q  271 ttttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttc 326  Q
    ||||||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  39387569 ttttcagtattttctttcatgttagcttttaaatcacgcgctagcttcaatgcttc 39387624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 195 - 331
Target Start/End: Complemental strand, 39138826 - 39138693
Alignment:
Q  195 gacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgtta 294  Q
    ||||||||||||||||||||||||| ||||| ||||||  |||||||||| |||||| ||||||||| ||| |||||||||||||||   ||||||||||    
T  39138826 gacttcatcttcatcaaaataagtaagcaattcataaactgacaaaatcagtagaaaaccgagaaccaccagagaattttcagtatt---tttcatgtta 39138730  T
Q  295 gctttcaactcacgcgctagcttcaatgcttcatctc 331  Q
    |||||||  | | | ||||||||||||||||| ||||    
T  39138729 gctttcagattaagtgctagcttcaatgcttcttctc 39138693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 198 - 331
Target Start/End: Complemental strand, 39371297 - 39371164
Alignment:
Q  198 ttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgttagct 297  Q
    |||||||||||||||| |||||  |||||||||| | ||||||| ||||||||| || |||||| |||||| ||||| | |||||||||||||||| |||    
T  39371297 ttcatcttcatcaaaagaagtaaccaatccataatttgacaaaagcaatagaaaaccaagaaccaccaaaggatttttactattttctttcatgttggct 39371198  T
Q  298 ttcaactcacgcgctagcttcaatgcttcatctc 331  Q
    ||||  ||| | ||||||||||||||||||||||    
T  39371197 ttcatatcaagtgctagcttcaatgcttcatctc 39371164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 171 - 331
Target Start/End: Complemental strand, 39216864 - 39216704
Alignment:
Q  171 agcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaa 270  Q
    |||||||||| |||||||||  |  |||||||||||| ||||| |||||  |||||||||||| ||||||| ||  ||||| ||||||||| ||||||||    
T  39216864 agcaacagatgcaaaaagctccaaaacttcatcttcaccaaaagaagtaaccaatccataaattgacaaaagcagaagaaaaccgagaaccaccaaagaa 39216765  T
Q  271 ttttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctc 331  Q
    |||| |||||||||  ||||||||| |||||| |||   ||||||||||||||||| ||||    
T  39216764 tttttagtattttcactcatgttagatttcaaatcaaatgctagcttcaatgcttcttctc 39216704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 171 - 331
Target Start/End: Original strand, 39396627 - 39396787
Alignment:
Q  171 agcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaa 270  Q
    |||||| ||| |||||||||  |  |||||||||||||| ||| ||||| ||||||||||||| ||||||| ||| | ||| || |||||| ||||||||    
T  39396627 agcaaccgatgcaaaaagctccaaaacttcatcttcatcgaaagaagtaagcaatccataaattgacaaaagcaacaaaaaaccaagaaccgccaaagaa 39396726  T
Q  271 ttttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctc 331  Q
    ||||||||||||||| | |||| |||| |||| ||| | |||||||||| |||||| ||||    
T  39396727 ttttcagtattttctctaatgtaagctctcaaatcatgtgctagcttcagtgcttcttctc 39396787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 196 - 325
Target Start/End: Original strand, 39205742 - 39205871
Alignment:
Q  196 acttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgttag 295  Q
    |||||||||| ||||||| ||  | |||||  |||||||||||||| || |||||| || |||||| ||| |||||||||||||||||||||||| ||||    
T  39205742 acttcatctttatcaaaagaatcaagcaatttataaatcgacaaaagcagtagaaaaccaagaaccgccatagaattttcagtattttctttcatcttag 39205841  T
Q  296 ctttcaactcacgcgctagcttcaatgctt 325  Q
    ||||||| |||   ||||||||||||||||    
T  39205842 ctttcaagtcaaatgctagcttcaatgctt 39205871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 171 - 326
Target Start/End: Original strand, 39196485 - 39196640
Alignment:
Q  171 agcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaa 270  Q
    ||||||| || |||||||||  |  |||||||||||||||||| ||  | |||||  |||||| ||||||| ||  ||||| || |||||| ||||||||    
T  39196485 agcaacaaatgcaaaaagctccaaaacttcatcttcatcaaaagaatcaagcaatttataaattgacaaaagcagcagaaagccaagaaccgccaaagaa 39196584  T
Q  271 ttttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttc 326  Q
    ||||||||||| || ||||||||||||||||| |||   |||||||||||||||||    
T  39196585 ttttcagtattgtcattcatgttagctttcaaatcaaatgctagcttcaatgcttc 39196640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 171 - 326
Target Start/End: Original strand, 39413004 - 39413159
Alignment:
Q  171 agcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaa 270  Q
    ||||||| || |||||||||  | || |||||||||||| ||| |||||  ||||||| |||  ||||||| ||| ||||| |  |||||| |||||||     
T  39413004 agcaacaaatgcaaaaagctccaagatttcatcttcatccaaaaaagtaaccaatccacaaactgacaaaagcaacagaaaactaagaaccgccaaagag 39413103  T
Q  271 ttttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttc 326  Q
    ||||| ||||||||||||| |||||||||||| ||| | |||||||||||||||||    
T  39413104 ttttcggtattttctttcaagttagctttcaaatcaagtgctagcttcaatgcttc 39413159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 203 - 325
Target Start/End: Original strand, 44895114 - 44895236
Alignment:
Q  203 cttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgttagctttcaa 302  Q
    ||||||| ||| |||||  |||||||||||| ||||||| || |||||| || |||||| |||||||||||||||||||| |||| ||||||||||| ||    
T  44895114 cttcatcgaaagaagtaatcaatccataaattgacaaaagcagtagaaaaccaagaaccaccaaagaattttcagtatttccttttatgttagctttgaa 44895213  T
Q  303 ctcacgcgctagcttcaatgctt 325  Q
     | | | ||||||||||||||||    
T  44895214 tttatgtgctagcttcaatgctt 44895236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 198 - 331
Target Start/End: Original strand, 39380496 - 39380629
Alignment:
Q  198 ttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgttagct 297  Q
    |||||||||||| ||| ||||| ||||||||||||| ||||||| || ||||||||| |||||| ||| ||||| ||||||||| ||| | |||| ||||    
T  39380496 ttcatcttcatcgaaagaagtaagcaatccataaattgacaaaagcagtagaaatccaagaaccgccacagaatcttcagtattctctcttatgtaagct 39380595  T
Q  298 ttcaactcacgcgctagcttcaatgcttcatctc 331  Q
    ||||| ||| | |||||| ||| |||||| ||||    
T  39380596 ttcaaatcaagtgctagcgtcagtgcttcttctc 39380629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 196 - 322
Target Start/End: Original strand, 39478294 - 39478420
Alignment:
Q  196 acttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgttag 295  Q
    |||||| |||| || ||| ||||| ||||||||||||| ||||||| || ||||||  | |||||  || |||||||||||||||||||| | |||| ||    
T  39478294 acttcaccttcttcgaaagaagtaagcaatccataaattgacaaaagcagtagaaaatcaagaactgccgaagaattttcagtattttctctgatgtaag 39478393  T
Q  296 ctttcaactcacgcgctagcttcaatg 322  Q
    ||||||| ||| | |||||||||||||    
T  39478394 ctttcaaatcatgtgctagcttcaatg 39478420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 171 - 326
Target Start/End: Original strand, 39421161 - 39421313
Alignment:
Q  171 agcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaa 270  Q
    ||||||| || |||||||||  |  |||||||||||||  |||||||||  ||||   ||||| ||||||| || |||||| |||||||||   |||  |    
T  39421161 agcaacaaatgcaaaaagctccaacacttcatcttcattgaaataagtaaccaattggtaaattgacaaaagcagtagaaaaccgagaacc---aaatta 39421257  T
Q  271 ttttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttc 326  Q
    |||||||||||||||| ||| ||||||||||| ||| | || ||||||||||||||    
T  39421258 ttttcagtattttcttccatattagctttcaaatcaagagcgagcttcaatgcttc 39421313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 196 - 325
Target Start/End: Complemental strand, 39223893 - 39223764
Alignment:
Q  196 acttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgttag 295  Q
    |||||||||||||||||  ||  | |||||  |||||| ||||||| ||  ||||| || |||||| ||||||| ||||||||||| |||||||||||      
T  39223893 acttcatcttcatcaaatgaatcaagcaatttataaattgacaaaagcagcagaaaaccaagaaccgccaaagatttttcagtattgtctttcatgtttt 39223794  T
Q  296 ctttcaactcacgcgctagcttcaatgctt 325  Q
    |||| || |||   ||||||||||||||||    
T  39223793 cttttaaatcatatgctagcttcaatgctt 39223764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 180 - 299
Target Start/End: Original strand, 39188738 - 39188857
Alignment:
Q  180 tccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagta 279  Q
    ||||||||||||||  || ||||||||||  ||| ||| |  ||| |||||||| || | ||  | |||||| || |||||| ||||||||||| || ||    
T  39188738 tccaaaaagctttaaaacatcatcttcattgaaagaaggaaccaaaccataaattgatagaaggagtagaaaaccaagaaccaccaaagaatttccatta 39188837  T
Q  280 ttttctttcatgttagcttt 299  Q
    ||||||||||||||||||||    
T  39188838 ttttctttcatgttagcttt 39188857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 97; Significance: 2e-47; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 195 - 331
Target Start/End: Complemental strand, 44730298 - 44730162
Alignment:
Q  195 gacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgtta 294  Q
    |||||||||| ||||||| |||||| |||||| |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  44730298 gacttcatctccatcaaagtaagtaagcaatctataaatcgtcaaaatcaatagaaatccgagaacctcctaagaattttcagtattttcttttatgtta 44730199  T
Q  295 gctttcaactcacgcgctagcttcaatgcttcatctc 331  Q
    |||||||||||| | ||||||||||| ||||||||||    
T  44730198 gctttcaactcatgtgctagcttcaaagcttcatctc 44730162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 170 - 331
Target Start/End: Original strand, 44949869 - 44950030
Alignment:
Q  170 cagcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaaga 269  Q
    ||||||||||| || |||||||   ||| ||||||  |||||| |||||| |||||||||||||||  | |||||||||||||| |||||||||||||||    
T  44949869 cagcaacagatgcataaagcttagagacatcatctcgatcaaagtaagtaagcaatccataaatcgttataatcaatagaaatctgagaacctccaaaga 44949968  T
Q  270 attttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctc 331  Q
    ||||| |||||||||||| || |||  |||||||||| | ||||||||||| ||||||||||    
T  44949969 atttttagtattttcttttattttaaatttcaactcatgtgctagcttcaaagcttcatctc 44950030  T

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Target: chr8; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 173 - 331
Target Start/End: Complemental strand, 45343170 - 45343012
Alignment:
Q  173 caacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaatt 272  Q
    |||||||| |||||||||  | ||||||||||| ||||||| ||||| ||||| ||| ||| |||||||||| |||||| || ||||| | ||| || ||    
T  45343170 caacagatacaaaaagctccaagacttcatctttatcaaaagaagtaagcaatacatgaattgacaaaatcagtagaaaaccaagaacgttcaatgattt 45343071  T
Q  273 ttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctc 331  Q
    |||||||||| |||||| |||||||||||||||| | |||||||| |||||||| ||||    
T  45343070 ttcagtatttcctttcacgttagctttcaactcaagtgctagcttgaatgcttcttctc 45343012  T

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Target: chr5 (Bit Score: 85; Significance: 3e-40; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 170 - 326
Target Start/End: Complemental strand, 17060854 - 17060698
Alignment:
Q  170 cagcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaaga 269  Q
    ||||||||||| ||||||| |  | ||||||||||| |||||||||||||  ||||||||||| |||||| ||||| |||||||||||||||||||| ||    
T  17060854 cagcaacagatgcaaaaagatccaagacttcatcttgatcaaaataagtaaacaatccataaaccgacaagatcaacagaaatccgagaacctccaatga 17060755  T
Q  270 attttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttc 326  Q
    || |||||||||| |||| |||||||||||||||||| | ||||||||||| |||||    
T  17060754 atattcagtatttgcttttatgttagctttcaactcatgtgctagcttcaaagcttc 17060698  T

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Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 171 - 326
Target Start/End: Complemental strand, 33562496 - 33562341
Alignment:
Q  171 agcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaa 270  Q
    ||||||| || |||||||||  |  |||||||||||||||||| ||  | |||||  |||||| ||||||| ||  ||||| || |||||| ||||| ||    
T  33562496 agcaacaaatgcaaaaagctccaaaacttcatcttcatcaaaagaatcaagcaatttataaattgacaaaagcatcagaaaaccaagaaccgccaaaaaa 33562397  T
Q  271 ttttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttc 326  Q
      |||||||||||||||||||||||||||||| |||   |||||||||||||||||    
T  33562396 aattcagtattttctttcatgttagctttcaaatcaaatgctagcttcaatgcttc 33562341  T

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Target: scaffold0283 (Bit Score: 74; Significance: 9e-34; HSPs: 1)
Name: scaffold0283
Description:

Target: scaffold0283; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 170 - 331
Target Start/End: Original strand, 5849 - 6010
Alignment:
Q  170 cagcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaaga 269  Q
    ||||||||||| || |||||||   ||| ||||||  |||||| |||||| |||||||||||||||  | |||||||||||||| |||||||||||||||    
T  5849 cagcaacagatgcataaagcttagagacatcatctcgatcaaagtaagtaagcaatccataaatcgttataatcaatagaaatctgagaacctccaaaga 5948  T
Q  270 attttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctc 331  Q
    ||||| |||||||||||| || |||  |||||||||| | ||||||||||| ||||||||||    
T  5949 atttttagtattttcttttattttaaatttcaactcatgtgctagcttcaaagcttcatctc 6010  T

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Target: chr7 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 195 - 331
Target Start/End: Complemental strand, 19809083 - 19808950
Alignment:
Q  195 gacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaagaattttcagtattttctttcatgtta 294  Q
    ||||||||||||||||||||||||| ||||| ||||||  ||||||| || |||||| || |||||| ||| ||||||||||||| |   ||||||||||    
T  19809083 gacttcatcttcatcaaaataagtaagcaattcataaactgacaaaagcagtagaaaaccaagaaccaccagagaattttcagtact---tttcatgtta 19808987  T
Q  295 gctttcaactcacgcgctagcttcaatgcttcatctc 331  Q
    |||||||| ||| | ||||||||||||| ||| ||||    
T  19808986 gctttcaaatcaagtgctagcttcaatgtttcttctc 19808950  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 268 - 325
Target Start/End: Complemental strand, 16114477 - 16114420
Alignment:
Q  268 gaattttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgctt 325  Q
    ||||||| |||||| ||| |||||| ||||||||| || |||||||||||||||||||    
T  16114477 gaatttttagtattctctctcatgtaagctttcaaatcgcgcgctagcttcaatgctt 16114420  T

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