View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6875A_low_70 (Length: 336)
Name: NF6875A_low_70
Description: NF6875A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6875A_low_70 |
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| [»] chr7 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 16 - 336
Target Start/End: Original strand, 3036513 - 3036834
Alignment:
| Q |
16 |
tcagagtagcttacttgttcaagaacgacgcataaaatctcagaatcaagaaattgatattgagcaagctttgaaggtttcgaatggaggaagaggatct |
115 |
Q |
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| T |
3036513 |
tcagagtagcttacttgttcaagaacgacgcataaaatctcagaatcaagaaattgatattgagcaagctttgaaggtttcgaatggaggaagaggatct |
3036612 |
T |
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| Q |
116 |
atgggatttggtagaggaagagggcgttcaggtgctagaggaaagggtaggggaagaatcaacacagattctattgagtgttataagtgtcacgagctgg |
215 |
Q |
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||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |
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| T |
3036613 |
atgggatatggtagaggaagagggcattcaggtgctagaggaaagggtaggggaagaatcaacaaagattctattgagtgttataagtgtcacaagctgg |
3036712 |
T |
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| Q |
216 |
gacactatcagaatgaatgtcccctatggg-gaaaaaatgcaaattatgctcaatttgaagatggtgaattgcttctgatggctcaatcatgcatgaaca |
314 |
Q |
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| T |
3036713 |
gacactatcagaatgaatgtcccctatgggaaaaaaaatgcaaattatgctcaatttgaagatggtgaattgcttctgatggctcaatcatgcatgaaca |
3036812 |
T |
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| Q |
315 |
caaatgccaaagatgaggtatg |
336 |
Q |
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| T |
3036813 |
caaatgccaaagatgaggtatg |
3036834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 26 - 336
Target Start/End: Original strand, 16863270 - 16863581
Alignment:
| Q |
26 |
ttacttgttcaagaacgacgcataaaatctcagaatcaagaaattgatattgagcaagctttgaaggtttcgaatggaggaagaggatctatgggatttg |
125 |
Q |
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| T |
16863270 |
ttacttgttcaagaacaacgcatgaaaactcaaaatcaagaaattgatattgaacaagctttgaaggcatctaatggtggaagaggatctgtaggatatg |
16863369 |
T |
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| Q |
126 |
gtagaggaagagggcgttcaggtgctagaggaaagggtaggggaagaatcaacacagattctattgagtgtta-taagtgtcacgagctgggacactatc |
224 |
Q |
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| T |
16863370 |
gtagaggaagagggcgttcaggtgttagaggaaggggtagaggaagaattaacaatggaagtgttgaatgctacaaagtgtcacaagctgggacactatc |
16863469 |
T |
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| Q |
225 |
agaatgaatgtcccctatggggaaaaaatgcaaattatgctcaatttgaagatggtgaattgcttctgatggctcaatcatgcatgaacacaaatgccaa |
324 |
Q |
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| T |
16863470 |
aaaatgaatgtcctctatgggaagaaaatgcacactatgttgagtttgaagatggtgaattgcttctgatggctcaatcatgtttgaacacaaatgccaa |
16863569 |
T |
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| Q |
325 |
agatgaggtatg |
336 |
Q |
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| T |
16863570 |
agatgaggtatg |
16863581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 20 - 336
Target Start/End: Original strand, 20528888 - 20529202
Alignment:
| Q |
20 |
agtagcttacttgttcaagaacgacgcataaaatctcagaatcaagaaattgatattgagcaagctttgaaggtttcgaatggaggaagaggatctatgg |
119 |
Q |
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||||| |||||||||||||||| |||||| |||||||| || ||||||| ||||| ||||||||||||||||||||| ||||| |||||||||||| ||| |
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| T |
20528888 |
agtagtttacttgttcaagaacaacgcatgaaatctcaaaaccaagaaactgatactgagcaagctttgaaggtttctaatggtggaagaggatctgtgg |
20528987 |
T |
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| Q |
120 |
gatttggtagaggaagagggcgttcaggtgctagaggaaagggtaggggaagaatcaacacagattctattgagtgttataagtgtcacgagctgggaca |
219 |
Q |
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||| ||| |||||||||||||||||| | ||||||| || | |||||||| |||| ||||| |||| || ||||||||||| |||| ||||| |
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| T |
20528988 |
gatatgggagaggaagagggcgttcaag-caaagaggaagatgtggaggaagaattaaca-agatttagttgaatgcaataagtgtcacaagctaggaca |
20529085 |
T |
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| Q |
220 |
ctatcagaatgaatgtcccctatggggaaaaaatgcaaattatgctcaatttgaagatggtgaattgcttctgatggctcaatcatgcatgaacacaaat |
319 |
Q |
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| T |
20529086 |
ctatcagaatgaatgtcatctatgggaaccaaattcaaattatgctgaatttgaagatggtgaatttcatctcatggctcaaacatgattgaacacaaat |
20529185 |
T |
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| Q |
320 |
gccaaagatgaggtatg |
336 |
Q |
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| T |
20529186 |
gtcaaagatgaggtatg |
20529202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 17 - 336
Target Start/End: Complemental strand, 40613109 - 40612802
Alignment:
| Q |
17 |
cagagtagcttacttgttcaagaacgacgcataaaatctcagaatcaagaaattgatattgagcaagctttgaaggtttcgaatggaggaagaggatcta |
116 |
Q |
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|||||||| |||||||||||||||| || ||| |||||||| |||||||| |||||| |||| ||||||||||||||||| ||||| | |||||| | |
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| T |
40613109 |
cagagtagtttacttgttcaagaacaacacatgaaatctcaaaatcaagacattgatgttgaacaagctttgaaggtttccaatggtgaaagaggtttcg |
40613010 |
T |
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| Q |
117 |
tgggatttggtagaggaagagggcgttcaggtgctagaggaaagggtaggggaagaatcaacacagattctattgagtgttataagtgtcacgagctggg |
216 |
Q |
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|||| | ||||||||||||||| ||||||||||||||| ||||||||||||| || | ||||||||| |||||||| | || |||| |
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| T |
40613009 |
tggggtatggtagaggaagaggacgttcaggtgctaga------------ggaagaatcaacaaagcaagtgttgagtgttttaagtgtcgcaagttggg |
40612922 |
T |
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| Q |
217 |
acactatcagaatgaatgtcccctatggggaaaaaatgcaaattatgctcaatttgaagatggtgaattgcttctgatggctcaatcatgcatgaacaca |
316 |
Q |
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|||||| |||||||| ||||| ||||||| | ||||||| || | |||| | ||||||||||||||||| ||||| ||||| ||||| ||| |||||||| |
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| T |
40612921 |
acactaccagaatgagtgtcctctatgggaagaaaatgctaactttgctaagtttgaagatggtgaattacttcttatggcccaatcttgcttgaacaca |
40612822 |
T |
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| Q |
317 |
aatgccaaagatgaggtatg |
336 |
Q |
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| T |
40612821 |
aacgccaaagatgaggtatg |
40612802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 151 - 336
Target Start/End: Original strand, 20542323 - 20542508
Alignment:
| Q |
151 |
tagaggaaagggtaggggaagaatcaacacagattctattgagtgttataagtgtcacgagctgggacactatcagaatgaatgtcccctatggggaaaa |
250 |
Q |
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|||||||| ||| || ||||||||||||| || | ||||||||| ||||||||| |||||||||||||||||||||| ||||| ||||||| | || |
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| T |
20542323 |
tagaggaaggggcagaggaagaatcaacaaagcaagtgttgagtgtttcaagtgtcacaagctgggacactatcagaatgagtgtcctctatgggaagaa |
20542422 |
T |
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| Q |
251 |
aatgcaaattatgctcaatttgaagatggtgaattgcttctgatggctcaatcatgcatgaacacaaatgccaaagatgaggtatg |
336 |
Q |
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| T |
20542423 |
aatgctaactttgctgagtttgaagatggtgaattacttcttatggctcaatcttgcttgaacacaaacgccaaagatgaggtatg |
20542508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 17 - 93
Target Start/End: Original strand, 20542213 - 20542289
Alignment:
| Q |
17 |
cagagtagcttacttgttcaagaacgacgcataaaatctcagaatcaagaaattgatattgagcaagctttgaaggt |
93 |
Q |
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|||||||| |||||||||||||||| |||||| ||||||||||||||||| ||||| |||| |||||||||||||| |
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| T |
20542213 |
cagagtagtttacttgttcaagaacaacgcatgaaatctcagaatcaagactttgatgttgaacaagctttgaaggt |
20542289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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